Variant report

Variant	rs565118892
Chromosome Location	chr6:113885966-113885967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3344043	chr6:113884509-113886407	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113884400-113886000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:113885000-113886400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:113885400-113886000	Flanking Active TSS	HepG2	liver
4	chr6:113885400-113886200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:113885400-113887000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:113885400-113887000	Flanking Active TSS	NHDF-Ad	bronchial
7	chr6:113885600-113886000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:113885600-113886000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:113885600-113886000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:113885600-113886000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:113885600-113886000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:113885600-113886000	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:113885600-113886000	Enhancers	Liver	Liver
14	chr6:113885600-113886000	Flanking Active TSS	Brain Angular Gyrus	brain
15	chr6:113885600-113886000	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr6:113885600-113886000	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr6:113885600-113886000	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr6:113885600-113886000	Flanking Active TSS	Fetal Brain Male	brain
19	chr6:113885600-113886000	Flanking Active TSS	Rectal Smooth Muscle	rectum
20	chr6:113885600-113886000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:113885600-113886200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr6:113885600-113886200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:113885600-113886200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:113885600-113886200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:113885600-113886200	Enhancers	Lung	lung
26	chr6:113885600-113886200	Enhancers	HUVEC	blood vessel
27	chr6:113885600-113886400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:113885600-113886400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:113885600-113886400	Enhancers	Fetal Intestine Small	intestine
30	chr6:113885600-113886400	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:113885600-113886400	Enhancers	Placenta	Placenta
32	chr6:113885600-113886400	Enhancers	Fetal Thymus	thymus
33	chr6:113885600-113886400	Flanking Active TSS	Psoas Muscle	Psoas
34	chr6:113885600-113886400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr6:113885600-113886400	Enhancers	GM12878-XiMat	blood
36	chr6:113885600-113886400	Enhancers	HMEC	breast
37	chr6:113885600-113886600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:113885600-113886600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr6:113885600-113886600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:113885600-113886600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:113885600-113886600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:113885600-113886600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:113885600-113886600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:113885600-113886600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:113885600-113886600	Flanking Active TSS	Fetal Brain Female	brain
46	chr6:113885600-113886600	Flanking Active TSS	Fetal Stomach	stomach
47	chr6:113885600-113886600	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr6:113885600-113886600	Flanking Active TSS	HSMM	muscle
49	chr6:113885600-113886800	Enhancers	H9 Cell Line	embryonic stem cell
50	chr6:113885600-113886800	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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