Variant report

Variant	rs565134272
Chromosome Location	chr4:149287936-149287937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
2	chr4:149277000-149291000	Weak transcription	Left Ventricle	heart
3	chr4:149277000-149296800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
5	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:149281400-149290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:149282200-149289000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:149282200-149289000	Weak transcription	Gastric	stomach
9	chr4:149282800-149289200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:149282800-149296800	Weak transcription	Psoas Muscle	Psoas
11	chr4:149283000-149289000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:149283000-149299000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:149283200-149293400	Weak transcription	Right Atrium	heart
14	chr4:149284200-149288000	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:149287800-149288000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr4:149287800-149288200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr4:149287800-149288400	Enhancers	Fetal Heart	heart
18	chr4:149287800-149288400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:149287800-149289600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links