Variant report

Variant	rs565136397
Chromosome Location	chr1:211965904-211965905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947158	chr1:211961270-211967493	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	esv3501609	chr1:211964429-211966827	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv3501610	chr1:211964429-211966827	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3452682	chr1:211964974-211965914	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211912800-211970200	Weak transcription	HMEC	breast
2	chr1:211913800-211967800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:211913800-211968800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:211913800-211969600	Weak transcription	Small Intestine	intestine
5	chr1:211914000-211973600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:211915800-211991800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:211916800-211994200	Weak transcription	Fetal Brain Male	brain
8	chr1:211917000-211970400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:211919200-212001200	Weak transcription	Gastric	stomach
10	chr1:211923000-211967200	Weak transcription	Colonic Mucosa	Colon
11	chr1:211923000-211991800	Weak transcription	HSMM	muscle
12	chr1:211923200-211967200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:211924000-212002400	Weak transcription	NHLF	lung
14	chr1:211935800-211969000	Weak transcription	Fetal Heart	heart
15	chr1:211936000-211966800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr1:211936400-211968200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:211938200-211999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:211939600-211978200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:211939600-211992600	Weak transcription	Esophagus	oesophagus
20	chr1:211939800-212002400	Weak transcription	HSMMtube	muscle
21	chr1:211940000-212000600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:211943200-211971200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr1:211943400-211972000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:211945800-211979000	Weak transcription	Colon Smooth Muscle	Colon
25	chr1:211946200-211984200	Weak transcription	NH-A	brain
26	chr1:211946800-211966600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr1:211947400-212002400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:211950000-211987000	Weak transcription	Fetal Thymus	thymus
29	chr1:211950600-211971800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:211950800-211971200	Weak transcription	Placenta	Placenta
31	chr1:211951400-211966200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:211951400-211978800	Weak transcription	Fetal Lung	lung
33	chr1:211951400-211992600	Weak transcription	Ovary	ovary
34	chr1:211952200-212003000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:211955200-211969400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:211957400-211967800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr1:211957600-211985200	Weak transcription	Brain Germinal Matrix	brain
38	chr1:211957600-211998800	Weak transcription	NHDF-Ad	bronchial
39	chr1:211957600-212000800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr1:211957800-211966000	Weak transcription	Spleen	Spleen
41	chr1:211957800-211973600	Weak transcription	K562	blood
42	chr1:211958000-211984200	Weak transcription	HUVEC	blood vessel
43	chr1:211959200-211966600	Strong transcription	Liver	Liver
44	chr1:211959200-211970400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:211960000-211970400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr1:211960000-211971400	Weak transcription	A549	lung
47	chr1:211960800-211982200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr1:211960800-211987600	Weak transcription	Pancreas	Pancrea
49	chr1:211961000-211969000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:211961200-212002200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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