Variant report

Variant	rs565144874
Chromosome Location	chr22:28776975-28776976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	esv3375925	chr22:28776038-28781986	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3358450	chr22:28776048-28781985	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28759800-28777200	Weak transcription	Fetal Stomach	stomach
2	chr22:28770000-28777400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr22:28770200-28777200	Weak transcription	Colon Smooth Muscle	Colon
4	chr22:28770400-28777000	Weak transcription	NHLF	lung
5	chr22:28772000-28777200	Weak transcription	Ovary	ovary
6	chr22:28772400-28777000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr22:28772400-28777200	Weak transcription	NHDF-Ad	bronchial
8	chr22:28772800-28777000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr22:28772800-28777000	Weak transcription	Osteobl	bone
10	chr22:28773000-28777200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr22:28773200-28777600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr22:28774400-28777200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr22:28775000-28777200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr22:28775200-28778200	Enhancers	Adipose Nuclei	Adipose
15	chr22:28775800-28777200	Weak transcription	A549	lung
16	chr22:28775800-28778200	Enhancers	Fetal Brain Female	brain
17	chr22:28776000-28778800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr22:28776000-28789000	Weak transcription	Dnd41	blood
19	chr22:28776200-28777200	Enhancers	Brain Germinal Matrix	brain
20	chr22:28776200-28777200	Weak transcription	Fetal Lung	lung
21	chr22:28776400-28777400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr22:28776400-28778000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr22:28776400-28778200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr22:28776600-28777000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr22:28776600-28777400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr22:28776600-28778200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr22:28776600-28778600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr22:28776600-28778600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr22:28776600-28778800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr22:28776800-28777000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr22:28776800-28778000	Enhancers	Brain Hippocampus Middle	brain
32	chr22:28776800-28778200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr22:28776800-28789600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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