Variant report

Variant	rs565146042
Chromosome Location	chr16:48642918-48642919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:48642624..48645570-chr16:48653678..48655637,3	MCF-7	breast:
2	chr16:48417371..48420713-chr16:48642499..48645364,3	K562	blood:
3	chr16:48636374..48639117-chr16:48642848..48644889,3	MCF-7	breast:
4	chr16:48278224..48281613-chr16:48642327..48645557,3	MCF-7	breast:
5	chr16:48290202..48292169-chr16:48641229..48643370,2	MCF-7	breast:
6	chr16:48636348..48638874-chr16:48641230..48644046,3	MCF-7	breast:
7	chr16:48576310..48578328-chr16:48641352..48644093,2	K562	blood:
8	chr16:48611677..48614965-chr16:48642822..48645500,3	MCF-7	breast:
9	chr16:48639871..48642943-chr16:48643346..48645873,3	MCF-7	breast:
10	chr16:48591602..48593821-chr16:48642725..48645233,2	MCF-7	breast:
11	chr16:48417956..48420702-chr16:48642244..48644303,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261267	Chromatin interaction
ENSG00000243609	Chromatin interaction
ENSG00000196470	Chromatin interaction
ENSG00000121270	Chromatin interaction
ENSG00000259912	Chromatin interaction
ENSG00000102910	Chromatin interaction
ENSG00000102921	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405809	chr16:48642876-48645424	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48640000-48643000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr16:48640000-48643000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:48640400-48643400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
4	chr16:48640600-48643000	Flanking Active TSS	HMEC	breast
5	chr16:48640800-48643400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr16:48641000-48643000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
7	chr16:48641000-48643200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr16:48641200-48643000	Flanking Active TSS	Fetal Brain Female	brain
9	chr16:48641200-48644600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr16:48641400-48643400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr16:48641600-48643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr16:48641600-48643000	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr16:48641600-48643400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr16:48641600-48643400	Flanking Active TSS	Dnd41	blood
15	chr16:48641800-48643200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:48641800-48643400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr16:48641800-48644400	Active TSS	Stomach Mucosa	stomach
18	chr16:48641800-48644400	Active TSS	HSMMtube	muscle
19	chr16:48641800-48644800	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr16:48641800-48644800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr16:48641800-48644800	Active TSS	HSMM	muscle
22	chr16:48641800-48645200	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr16:48642000-48643000	Flanking Active TSS	HepG2	liver
24	chr16:48642000-48643200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr16:48642000-48643400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr16:48642000-48643400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr16:48642000-48643400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr16:48642000-48643600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr16:48642000-48643600	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr16:48642000-48644600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:48642000-48644600	Active TSS	Esophagus	oesophagus
32	chr16:48642000-48644800	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr16:48642200-48643000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr16:48642200-48643000	Flanking Active TSS	Liver	Liver
35	chr16:48642200-48643000	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr16:48642200-48643000	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr16:48642200-48643200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr16:48642200-48643400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr16:48642200-48643400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr16:48642200-48643400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr16:48642200-48644000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr16:48642200-48644800	Active TSS	H9 Cell Line	embryonic stem cell
43	chr16:48642200-48644800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr16:48642200-48644800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr16:48642400-48643000	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr16:48642400-48643000	Flanking Active TSS	Fetal Intestine Large	intestine
47	chr16:48642400-48643000	Flanking Active TSS	Fetal Thymus	thymus
48	chr16:48642400-48643000	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr16:48642400-48643000	Flanking Active TSS	Hela-S3	cervix
50	chr16:48642400-48643200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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