Variant report

Variant	rs565178946
Chromosome Location	chr7:152463527-152463528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:152457650..152460498-chr7:152461318..152464362,6	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949483	chr7:151791158-152499822	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv966912	chr7:152458603-152467072	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv1796726	chr7:152463181-152498103	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152457800-152471000	Weak transcription	Gastric	stomach
2	chr7:152458400-152466600	Weak transcription	Right Atrium	heart
3	chr7:152458800-152468200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:152459200-152466200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:152459200-152472000	Weak transcription	K562	blood
6	chr7:152459400-152471600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:152459400-152472000	Weak transcription	GM12878-XiMat	blood
8	chr7:152462800-152463600	Enhancers	Fetal Brain Female	brain
9	chr7:152462800-152463600	Enhancers	HUVEC	blood vessel
10	chr7:152463000-152467400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:152463200-152463600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:152463200-152463600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:152463200-152463600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:152463200-152463600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:152463200-152463600	Enhancers	Adipose Nuclei	Adipose
16	chr7:152463200-152463600	Enhancers	Brain Angular Gyrus	brain
17	chr7:152463200-152463600	Active TSS	Brain Anterior Caudate	brain
18	chr7:152463200-152463600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:152463200-152463600	Enhancers	Brain Substantia Nigra	brain
20	chr7:152463200-152463600	Enhancers	Left Ventricle	heart
21	chr7:152463200-152463600	Enhancers	Lung	lung
22	chr7:152463200-152463600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr7:152463200-152463600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr7:152463200-152463600	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links