Variant report

Variant	rs565184834
Chromosome Location	chr15:92714141-92714142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92711407..92714704-chr15:92715302..92716979,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLCO3A1-2	chr15:92714102-92715665	NONHSAT048516

Variant related genes	Relation type
ENSG00000258761	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:92692800-92715200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:92706200-92714800	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:92706400-92714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:92708200-92719000	Weak transcription	Lung	lung
8	chr15:92708600-92716000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:92709000-92715400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:92709400-92714800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:92711000-92714800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart
13	chr15:92712400-92716400	Weak transcription	Fetal Heart	heart
14	chr15:92713000-92717400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:92713200-92714800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:92713200-92714800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:92713400-92714200	Enhancers	GM12878-XiMat	blood
18	chr15:92713400-92715200	Enhancers	Liver	Liver
19	chr15:92713400-92715400	Enhancers	HepG2	liver
20	chr15:92713600-92714400	Enhancers	Stomach Mucosa	stomach
21	chr15:92714000-92714200	Enhancers	Esophagus	oesophagus
22	chr15:92714000-92715400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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