Variant report

Variant	rs565218092
Chromosome Location	chr15:74774653-74774654
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74752377..74755555-chr15:74772398..74775932,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
4	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
5	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
8	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
10	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:74755200-74775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:74755200-74776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:74755200-74789200	Weak transcription	NHEK	skin
17	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:74755400-74775000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:74756800-74781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:74757000-74782000	Weak transcription	Primary B cells from cord blood	blood
23	chr15:74757200-74782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:74760800-74785600	Weak transcription	Ovary	ovary
25	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
26	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:74763600-74782400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:74765200-74775400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:74765200-74782000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:74765400-74781000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:74765400-74782200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:74766200-74781600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr15:74766200-74782400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:74767400-74781800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:74767600-74775000	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:74767600-74781000	Weak transcription	Dnd41	blood
39	chr15:74767600-74781400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr15:74767600-74781600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:74767600-74782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:74767600-74804800	Weak transcription	Lung	lung
43	chr15:74767800-74775000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:74768000-74781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:74768200-74775200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:74768200-74775200	Weak transcription	GM12878-XiMat	blood
47	chr15:74768200-74797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:74768400-74781800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr15:74768400-74781800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr15:74769800-74800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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