Variant report

Variant	rs565239367
Chromosome Location	chr12:122635454-122635455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:122631254..122633106-chr12:122634821..122636708,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv527450	chr12:122481290-122676531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1038827	chr12:122627371-122687913	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv21424	chr12:122634975-122649886	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122627000-122646800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:122627400-122636400	Weak transcription	K562	blood
3	chr12:122627800-122636000	Weak transcription	Psoas Muscle	Psoas
4	chr12:122628200-122637400	Weak transcription	Brain Substantia Nigra	brain
5	chr12:122628400-122636400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:122628600-122640000	Weak transcription	Esophagus	oesophagus
7	chr12:122628800-122636200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:122628800-122636200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr12:122628800-122636200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:122628800-122636400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:122628800-122636400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:122628800-122636400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:122628800-122636600	Weak transcription	A549	lung
14	chr12:122628800-122637400	Weak transcription	Brain Anterior Caudate	brain
15	chr12:122628800-122637600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr12:122629000-122636600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr12:122629200-122640600	Weak transcription	Primary T cells from cord blood	blood
18	chr12:122629200-122643600	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:122630200-122636200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr12:122630200-122636400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr12:122630600-122641200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr12:122630600-122655600	Weak transcription	Right Ventricle	heart
23	chr12:122630800-122640200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:122632400-122636400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr12:122632600-122636400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr12:122633400-122636400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:122634000-122636400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr12:122634000-122649600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links