Variant report

Variant	rs565240532
Chromosome Location	chr6:146042532-146042533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146042289..146044000-chr6:146051001..146052592,2	MCF-7	breast:
2	chr6:146040825..146042704-chr6:146055386..146057604,2	MCF-7	breast:
3	chr6:146040935..146043789-chr6:146048451..146050573,2	K562	blood:
4	chr6:146040316..146042577-chr6:146048417..146050382,3	K562	blood:
5	chr6:146041485..146043057-chr6:146133059..146134567,2	K562	blood:
6	chr6:146040708..146045667-chr6:146052083..146058701,12	K562	blood:

Variant related genes	Relation type
ENSG00000270828	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000112425	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934064	chr6:146007547-146044233	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3424432	chr6:146041308-146057603	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146006800-146050000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:146007400-146043800	Weak transcription	Liver	Liver
3	chr6:146026800-146055800	Weak transcription	Left Ventricle	heart
4	chr6:146027600-146043400	Weak transcription	Psoas Muscle	Psoas
5	chr6:146028600-146049200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:146030000-146043000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:146030200-146054000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:146035800-146055200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:146036200-146044200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:146036200-146049800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:146036200-146054800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:146036600-146044600	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:146036800-146050000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:146036800-146050000	Weak transcription	Thymus	Thymus
15	chr6:146037000-146052000	Weak transcription	Ovary	ovary
16	chr6:146037600-146043600	Weak transcription	Primary T cells from cord blood	blood
17	chr6:146037800-146044800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:146038400-146052600	Weak transcription	Fetal Heart	heart
19	chr6:146041400-146043800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:146041800-146050000	Weak transcription	Fetal Stomach	stomach
21	chr6:146042000-146044800	Weak transcription	Primary B cells from cord blood	blood

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