Variant report

Variant	rs565265620
Chromosome Location	chr12:32178071-32178072
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32173013..32175537-chr12:32177292..32179791,2	K562	blood:
2	chr12:32175862..32178406-chr12:32179354..32181196,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558100	chr12:31866833-32185924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1045464	chr12:31869888-32183792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv541447	chr12:31869888-32183792	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	esv3430326	chr12:32142734-32216569	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3410287	chr12:32142734-32219420	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv2761731	chr12:32177270-32206870	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32154400-32178400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:32154800-32179400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:32156200-32179000	Weak transcription	Primary B cells from cord blood	blood
4	chr12:32166000-32186400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:32166400-32184200	Weak transcription	Ovary	ovary
6	chr12:32171800-32181000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:32174000-32178400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:32176600-32179000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:32177400-32180000	Weak transcription	Gastric	stomach
10	chr12:32177600-32178200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr12:32177600-32178600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:32177600-32181400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:32177800-32178200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:32177800-32178200	Enhancers	Fetal Lung	lung
15	chr12:32177800-32178200	Enhancers	A549	lung
16	chr12:32177800-32178400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:32177800-32178400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:32177800-32178400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr12:32177800-32178400	Enhancers	HepG2	liver
20	chr12:32177800-32178600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr12:32177800-32179000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr12:32177800-32179200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr12:32177800-32179200	Enhancers	Dnd41	blood
24	chr12:32177800-32180200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr12:32177800-32180200	Enhancers	Fetal Thymus	thymus
26	chr12:32177800-32181400	Enhancers	Primary T cells from cord blood	blood
27	chr12:32178000-32178200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr12:32178000-32178400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr12:32178000-32178400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:32178000-32178400	Enhancers	Fetal Intestine Large	intestine
31	chr12:32178000-32178400	Enhancers	Fetal Intestine Small	intestine
32	chr12:32178000-32178400	Flanking Active TSS	K562	blood
33	chr12:32178000-32178600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr12:32178000-32179600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr12:32178000-32179600	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr12:32178000-32180000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr12:32178000-32180000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr12:32178000-32180200	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr12:32178000-32180200	Enhancers	Thymus	Thymus
40	chr12:32178000-32180400	Enhancers	Primary T cells fromperipheralblood	blood
41	chr12:32178000-32181200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr12:32178000-32181400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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