Variant report

Variant	rs565270784
Chromosome Location	chr2:48757471-48757472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STON1-1	chr2:48757019-48759056	NONHSAT070625

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005954	chr2:48692696-48905723	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535682	chr2:48692696-48905723	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv833981	chr2:48705444-48878179	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1007491	chr2:48752185-48796441	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv535683	chr2:48752185-48796441	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3390375	chr2:48755948-48758496	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3359548	chr2:48756073-48758621	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48740000-48757600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:48756400-48757800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:48756400-48757800	Active TSS	HSMM	muscle
4	chr2:48756400-48758000	Enhancers	Fetal Brain Male	brain
5	chr2:48756400-48758000	Flanking Active TSS	Dnd41	blood
6	chr2:48756400-48758600	Active TSS	Fetal Kidney	kidney
7	chr2:48756400-48759000	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr2:48756600-48757600	Weak transcription	Fetal Heart	heart
9	chr2:48756600-48757600	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr2:48756600-48757600	Active TSS	GM12878-XiMat	blood
11	chr2:48756600-48758000	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr2:48756600-48758000	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr2:48756600-48758000	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr2:48756600-48758200	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr2:48756600-48758400	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr2:48756600-48758600	Active TSS	Fetal Lung	lung
17	chr2:48756600-48758800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr2:48756600-48758800	Active TSS	Duodenum Mucosa	Duodenum
19	chr2:48756600-48759000	Active TSS	Colon Smooth Muscle	Colon
20	chr2:48756600-48759000	Active TSS	Fetal Brain Female	brain
21	chr2:48756600-48759800	Active TSS	Stomach Smooth Muscle	stomach
22	chr2:48756800-48757600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:48756800-48757600	Active TSS	Right Ventricle	heart
24	chr2:48756800-48757600	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr2:48756800-48757600	Active TSS	Thymus	Thymus
26	chr2:48756800-48757600	Active TSS	HepG2	liver
27	chr2:48756800-48757600	Active TSS	HMEC	breast
28	chr2:48756800-48757600	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
29	chr2:48756800-48757600	Active TSS	NHEK	skin
30	chr2:48756800-48757800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:48756800-48757800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr2:48756800-48757800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr2:48756800-48757800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr2:48756800-48757800	Active TSS	Brain Cingulate Gyrus	brain
35	chr2:48756800-48757800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
36	chr2:48756800-48757800	Active TSS	Small Intestine	intestine
37	chr2:48756800-48757800	Enhancers	Stomach Mucosa	stomach
38	chr2:48756800-48757800	Active TSS	A549	lung
39	chr2:48756800-48757800	Active TSS	HSMMtube	muscle
40	chr2:48756800-48757800	Active TSS	K562	blood
41	chr2:48756800-48758000	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr2:48756800-48758000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr2:48756800-48758000	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr2:48756800-48758000	Active TSS	Placenta Amnion	Placenta Amnion
45	chr2:48756800-48758000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
46	chr2:48756800-48758200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr2:48756800-48758200	Active TSS	Primary T cells from cord blood	blood
48	chr2:48756800-48758200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr2:48756800-48758200	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr2:48756800-48758400	Active TSS	HUES6 Cell Line	embryonic stem cell

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