Variant report

Variant	rs565271642
Chromosome Location	chr9:79319308-79319309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:79319259-79320092	SK-N-SH	brain:	n/a	n/a
2	SMC3	chr9:79319299-79320226	SK-N-SH	brain:	n/a	n/a
3	FOXA2	chr9:79319141-79319494	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:79062552..79063515-chr9:79319220..79320201,4	K562	blood:
2	chr9:77880081..77881018-chr9:79319218..79320052,2	K562	blood:
3	chr9:79017921..79018920-chr9:79318594..79320251,5	K562	blood:
4	chr9:79277119..79278141-chr9:79318359..79319673,4	MCF-7	breast:
5	chr9:79280331..79281278-chr9:79319093..79320181,5	MCF-7	breast:
6	chr9:79280654..79281415-chr9:79319254..79320174,3	K562	blood:

No data

Variant related genes	Relation type
PRUNE2	TF binding region
ENSG00000265488	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893481	chr9:79304043-79348193	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2754389	chr9:79318677-79333056	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79300400-79332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:79314200-79320000	Enhancers	Fetal Brain Male	brain
3	chr9:79315200-79319400	Weak transcription	Stomach Mucosa	stomach
4	chr9:79315200-79319600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:79315200-79327600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:79315400-79319400	Weak transcription	Fetal Kidney	kidney
7	chr9:79316200-79330800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:79316400-79319800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:79316400-79332000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:79316600-79319400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:79316600-79324600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:79316800-79319400	Weak transcription	Brain Angular Gyrus	brain
13	chr9:79316800-79319800	Weak transcription	Brain Anterior Caudate	brain
14	chr9:79316800-79322800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:79316800-79325400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:79316800-79331000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:79316800-79331200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:79317200-79319600	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:79317400-79319800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr9:79317400-79327800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:79317400-79328600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:79317600-79319400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:79317600-79319400	Weak transcription	NHDF-Ad	bronchial
24	chr9:79317600-79320000	Weak transcription	Aorta	Aorta
25	chr9:79317600-79330800	Strong transcription	HSMM	muscle
26	chr9:79317800-79328600	Strong transcription	HSMMtube	muscle
27	chr9:79318000-79330400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:79318200-79319400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:79318200-79319400	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:79318400-79319800	Enhancers	HUVEC	blood vessel
31	chr9:79318400-79330000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:79318800-79319800	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:79318800-79319800	Weak transcription	Fetal Stomach	stomach
34	chr9:79318800-79319800	Weak transcription	Fetal Thymus	thymus
35	chr9:79318800-79320000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr9:79318800-79323200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:79319000-79319800	Weak transcription	Brain Substantia Nigra	brain
38	chr9:79319200-79319800	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links