Variant report

Variant	rs565289027
Chromosome Location	chr1:85749326-85749327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:85749110-85749721	HepG2	liver:	n/a	chr1:85749276-85749287
2	RCOR1	chr1:85749205-85749398	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr1:85749293-85749596	HepG2	liver:	n/a	n/a
4	CEBPB	chr1:85749188-85749508	MCF-7	breast:	n/a	chr1:85749276-85749287
5	EGR1	chr1:85749085-85749492	K562	blood:	n/a	n/a
6	POLR2A	chr1:85749311-85749601	HepG2	liver:	n/a	n/a
7	CEBPB	chr1:85749071-85749458	ECC-1	luminal epithelium:	n/a	chr1:85749276-85749287
8	MAX	chr1:85749302-85749482	Hela-S3	cervix:	n/a	n/a
9	CEBPB	chr1:85749034-85749344	HepG2	liver:	n/a	chr1:85749276-85749287
10	MAX	chr1:85749304-85749504	HepG2	liver:	n/a	n/a
11	CEBPB	chr1:85748919-85749601	HCT-116	colon:	n/a	chr1:85749276-85749287
12	ZNF384	chr1:85749194-85749380	K562	blood:	n/a	n/a
13	HEY1	chr1:85749313-85749590	HepG2	liver:	n/a	n/a
14	POLR2A	chr1:85749269-85749906	HepG2	liver:	n/a	n/a
15	CEBPB	chr1:85749091-85749470	K562	blood:	n/a	chr1:85749276-85749287
16	CEBPB	chr1:85749088-85749355	K562	blood:	n/a	chr1:85749276-85749287
17	RCOR1	chr1:85749205-85749416	HepG2	liver:	n/a	n/a
18	CEBPB	chr1:85749043-85749409	K562	blood:	n/a	chr1:85749276-85749287
19	MYC	chr1:85749155-85749385	H1-hESC	embryonic stem cell:	n/a	n/a
20	CEBPB	chr1:85749072-85749454	ECC-1	luminal epithelium:	n/a	chr1:85749276-85749287
21	CEBPB	chr1:85749170-85749356	HepG2	liver:	n/a	chr1:85749276-85749287
22	CEBPB	chr1:85749102-85749407	H1-hESC	embryonic stem cell:	n/a	chr1:85749276-85749287
23	MAZ	chr1:85749284-85749469	HepG2	liver:	n/a	n/a
24	CEBPB	chr1:85749119-85749404	A549	lung:	n/a	chr1:85749276-85749287
25	EGR1	chr1:85749115-85749426	K562	blood:	n/a	n/a
26	CEBPB	chr1:85749112-85749470	Hela-S3	cervix:	n/a	chr1:85749276-85749287
27	CEBPB	chr1:85749096-85749471	HepG2	liver:	n/a	chr1:85749276-85749287
28	POLR2A	chr1:85749293-85749529	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85741905..85744580-chr1:85747619..85751624,6	K562	blood:

Variant related genes	Relation type
ENSG00000264380	TF binding region
ENSG00000142867	Chromatin interaction
ENSG00000223653	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3450265	chr1:85747914-85749962	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv2574928	chr1:85748263-85749909	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	esv1008164	chr1:85748448-85749693	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
7	esv3372523	chr1:85748464-85749462	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85742800-85763000	Weak transcription	Ovary	ovary
2	chr1:85743000-85773600	Weak transcription	Right Atrium	heart
3	chr1:85743200-85752000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:85745200-85753600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr1:85745400-85749400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:85745600-85749400	Weak transcription	Gastric	stomach
7	chr1:85745600-85749400	Weak transcription	Pancreas	Pancrea
8	chr1:85745800-85749400	Weak transcription	Lung	lung
9	chr1:85745800-85749600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:85746800-85753600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:85747000-85749600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:85747600-85749400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:85747600-85750200	Weak transcription	Primary B cells from cord blood	blood
14	chr1:85747800-85750000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:85748000-85749600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:85748000-85749800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:85748000-85750000	Enhancers	NHEK	skin
18	chr1:85748400-85749600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:85748600-85764000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:85748800-85749600	Weak transcription	Fetal Intestine Small	intestine
21	chr1:85748800-85750800	Enhancers	Esophagus	oesophagus
22	chr1:85749000-85749600	Enhancers	A549	lung
23	chr1:85749000-85749800	Enhancers	HMEC	breast
24	chr1:85749000-85750200	Enhancers	Stomach Mucosa	stomach
25	chr1:85749200-85749400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:85749200-85749600	Enhancers	Psoas Muscle	Psoas
27	chr1:85749200-85749600	Flanking Active TSS	HepG2	liver
28	chr1:85749200-85749800	Enhancers	Colonic Mucosa	Colon
29	chr1:85749200-85749800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr1:85749200-85750000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:85749200-85750000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:85749200-85750000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr1:85749200-85750200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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