Variant report

Variant	rs565297221
Chromosome Location	chr2:177713847-177713848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459953	chr2:177704321-177720675	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv583687	chr2:177704321-177720675	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177710000-177716800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:177710600-177716000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:177710800-177715000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr2:177710800-177716600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:177711400-177715800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:177712200-177717200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:177712600-177716200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:177712600-177716600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:177712600-177717200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:177712600-177717200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:177712800-177716600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:177712800-177716800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:177713800-177715800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links