Variant report

Variant	rs565392441
Chromosome Location	chr11:46939722-46939723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46933810..46936759-chr11:46937673..46939969,2	MCF-7	breast:
2	chr11:46938691..46940925-chr17:56734920..56736797,2	MCF-7	breast:
3	chr11:46846941..46849918-chr11:46939245..46941639,2	MCF-7	breast:
4	chr11:46933026..46934959-chr11:46937593..46939848,2	K562	blood:

Variant related genes	Relation type
ENSG00000175216	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3354576	chr11:46938801-46941349	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46937600-46939800	Active TSS	Fetal Kidney	kidney
2	chr11:46937800-46939800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:46937800-46940400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr11:46937800-46940400	Active TSS	Brain Anterior Caudate	brain
5	chr11:46937800-46940400	Active TSS	Brain Cingulate Gyrus	brain
6	chr11:46937800-46940400	Active TSS	HSMMtube	muscle
7	chr11:46938000-46939800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
8	chr11:46938000-46940400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:46938000-46940600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:46938000-46940600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:46938000-46940600	Active TSS	Ovary	ovary
12	chr11:46938000-46940600	Flanking Bivalent TSS/Enh	Thymus	Thymus
13	chr11:46938000-46940800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:46938000-46940800	Active TSS	H9 Cell Line	embryonic stem cell
15	chr11:46938000-46941200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
17	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
18	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
20	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
21	chr11:46938200-46940400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr11:46938200-46940400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:46938200-46940400	Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr11:46938200-46940400	Active TSS	Brain Substantia Nigra	brain
25	chr11:46938200-46940400	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr11:46938200-46940400	Active TSS	Fetal Lung	lung
27	chr11:46938200-46940400	Active TSS	A549	lung
28	chr11:46938200-46940400	Active TSS	NHDF-Ad	bronchial
29	chr11:46938200-46940600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:46938200-46940600	Active TSS	Aorta	Aorta
31	chr11:46938200-46941000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr11:46938400-46940400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:46938400-46940400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:46938400-46940400	Active TSS	Brain Angular Gyrus	brain
35	chr11:46938400-46940400	Active TSS	Colon Smooth Muscle	Colon
36	chr11:46938400-46940400	Active TSS	Pancreas	Pancrea
37	chr11:46938400-46940600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:46938400-46940600	Active TSS	Esophagus	oesophagus
39	chr11:46938400-46940600	Active TSS	Left Ventricle	heart
40	chr11:46938600-46939800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:46938600-46940000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr11:46938600-46940400	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr11:46938600-46940400	Active TSS	Small Intestine	intestine
44	chr11:46938800-46939800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
45	chr11:46938800-46939800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:46938800-46939800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr11:46938800-46940400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:46939000-46939800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
49	chr11:46939000-46939800	Flanking Active TSS	Spleen	Spleen
50	chr11:46939000-46940400	Active TSS	Hela-S3	cervix

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