Variant report

Variant	rs565394017
Chromosome Location	chr2:206129863-206129864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3459020	chr2:206127621-206130132	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
5	esv3459021	chr2:206127897-206129976	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	nsv819159	chr2:206127941-206129943	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv3459018	chr2:206127951-206129941	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3459017	chr2:206127954-206129938	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3459022	chr2:206127970-206129885	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3459023	chr2:206127970-206129885	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	nsv820342	chr2:206128007-206129947	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv10666	chr2:206128056-206130221	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv1840371	chr2:206128178-206129889	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv1841054	chr2:206128178-206129889	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv1838141	chr2:206128178-206129906	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv1839435	chr2:206128178-206129906	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv1842204	chr2:206128178-206129906	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv1842505	chr2:206128178-206129906	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv1837649	chr2:206128178-206131317	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206097200-206170600	Weak transcription	HSMMtube	muscle
2	chr2:206108400-206145200	Weak transcription	HSMM	muscle
3	chr2:206113400-206139800	Weak transcription	Pancreas	Pancrea
4	chr2:206118200-206156600	Weak transcription	Aorta	Aorta
5	chr2:206128200-206130600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:206128200-206131000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:206128400-206130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links