Variant report

Variant	rs565509571
Chromosome Location	chr15:74291897-74291898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr15:74291707-74291907	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74276152..74278081-chr15:74290806..74293651,2	K562	blood:
2	chr15:74288636..74290848-chr15:74291772..74294059,2	MCF-7	breast:

Variant related genes	Relation type
STOML1	TF binding region
ENSG00000140464	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv518316	chr15:74290993-74331083	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74288200-74301800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:74288200-74303000	Weak transcription	A549	lung
3	chr15:74288200-74303800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:74288200-74331000	Weak transcription	Fetal Heart	heart
5	chr15:74289600-74302400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:74289800-74292000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:74289800-74292000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
8	chr15:74289800-74293000	Genic enhancers	Primary T cells fromperipheralblood	blood
9	chr15:74289800-74296000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
10	chr15:74289800-74303200	Weak transcription	Brain Substantia Nigra	brain
11	chr15:74289800-74331000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:74290000-74292000	Genic enhancers	Primary T cells from cord blood	blood
13	chr15:74290000-74292000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:74290000-74295200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:74290000-74299000	Weak transcription	Stomach Mucosa	stomach
16	chr15:74290000-74303400	Weak transcription	Fetal Kidney	kidney
17	chr15:74290000-74314800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:74290200-74292000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:74290200-74292000	Genic enhancers	Primary B cells from cord blood	blood
20	chr15:74290200-74292000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:74290200-74292000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:74290200-74292000	Strong transcription	Fetal Brain Female	brain
23	chr15:74290200-74292000	Strong transcription	HSMMtube	muscle
24	chr15:74290200-74292000	Strong transcription	NH-A	brain
25	chr15:74290200-74292400	Genic enhancers	Primary hematopoietic stem cells	blood
26	chr15:74290200-74292800	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr15:74290200-74293000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:74290200-74293400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:74290200-74298200	Weak transcription	HepG2	liver
30	chr15:74290400-74292000	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr15:74290400-74292000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr15:74290400-74292000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:74290400-74292000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:74290400-74292000	Genic enhancers	Liver	Liver
35	chr15:74290400-74292000	Strong transcription	Fetal Intestine Large	intestine
36	chr15:74290400-74292000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:74290400-74292000	Genic enhancers	HUVEC	blood vessel
38	chr15:74290400-74292000	Genic enhancers	NHDF-Ad	bronchial
39	chr15:74290400-74292000	Genic enhancers	Osteobl	bone
40	chr15:74290400-74292400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr15:74290400-74293400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:74290400-74293600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:74290400-74299000	Strong transcription	Fetal Thymus	thymus
44	chr15:74290600-74292000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:74290600-74292000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:74290600-74292000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:74290600-74292000	Strong transcription	Brain Hippocampus Middle	brain
48	chr15:74290600-74292000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:74290600-74292200	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr15:74290600-74296800	Strong transcription	Fetal Lung	lung

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