Variant report

Variant	rs565561633
Chromosome Location	chr19:19367787-19367788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19365186..19369263-chr19:19370853..19375419,4	K562	blood:
2	chr19:19367557..19369074-chr19:19377378..19379497,2	K562	blood:
3	chr19:19365186..19370293-chr19:19370853..19374199,4	K562	blood:

Variant related genes	Relation type
ENSG00000213996	Chromatin interaction
ENSG00000187664	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv911306	chr19:19366643-19391838	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3355822	chr19:19367577-19370125	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19361600-19367800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr19:19361600-19372200	Weak transcription	Brain Angular Gyrus	brain
3	chr19:19363400-19371600	Weak transcription	Brain Germinal Matrix	brain
4	chr19:19366400-19368200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:19366600-19367800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:19366600-19367800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:19366600-19368200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr19:19366600-19368200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr19:19367000-19368200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:19367000-19370400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr19:19367200-19367800	Enhancers	Fetal Brain Male	brain
12	chr19:19367200-19368000	Bivalent Enhancer	HepG2	liver
13	chr19:19367200-19368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:19367400-19367800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:19367600-19367800	Bivalent Enhancer	Fetal Intestine Small	intestine
16	chr19:19367600-19368000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr19:19367600-19368400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr19:19367600-19368400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr19:19367600-19370000	Strong transcription	Fetal Stomach	stomach
20	chr19:19367600-19370600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr19:19367600-19371600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr19:19367600-19371600	Weak transcription	Fetal Brain Female	brain

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