Variant report

Variant	rs565640678
Chromosome Location	chr22:28540940-28540941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28536612..28538610-chr22:28539278..28541623,2	K562	blood:
2	chr22:28539281..28541367-chr22:28542040..28544765,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28533600-28542800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:28533800-28559000	Weak transcription	Aorta	Aorta
3	chr22:28534200-28545200	Enhancers	Fetal Lung	lung
4	chr22:28534400-28544000	Enhancers	Fetal Brain Male	brain
5	chr22:28534600-28541000	Enhancers	Fetal Stomach	stomach
6	chr22:28535400-28541200	Enhancers	Colon Smooth Muscle	Colon
7	chr22:28536000-28542200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr22:28536000-28544400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr22:28536200-28542400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr22:28536200-28546600	Weak transcription	Left Ventricle	heart
11	chr22:28536200-28549600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr22:28536400-28542200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr22:28536800-28543800	Enhancers	Fetal Brain Female	brain
14	chr22:28537200-28541000	Enhancers	Fetal Kidney	kidney
15	chr22:28537200-28558800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr22:28537400-28542400	Weak transcription	Right Ventricle	heart
17	chr22:28538000-28542200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr22:28538400-28543600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr22:28538400-28544800	Weak transcription	Dnd41	blood
20	chr22:28538800-28541000	Enhancers	Fetal Muscle Leg	muscle
21	chr22:28538800-28549800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr22:28539000-28541800	Weak transcription	Brain Substantia Nigra	brain
23	chr22:28539200-28541000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr22:28539200-28541800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr22:28539200-28542400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr22:28539200-28547000	Weak transcription	Fetal Intestine Small	intestine
27	chr22:28539200-28558400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr22:28539400-28542000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr22:28539600-28549800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr22:28539800-28541000	Enhancers	Ovary	ovary
31	chr22:28539800-28542000	Weak transcription	Brain Hippocampus Middle	brain
32	chr22:28539800-28542200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr22:28540000-28541000	Enhancers	Right Atrium	heart
34	chr22:28540000-28542000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr22:28540000-28542800	Weak transcription	Osteobl	bone
36	chr22:28540200-28542200	Weak transcription	Brain Angular Gyrus	brain
37	chr22:28540200-28542200	Weak transcription	Brain Anterior Caudate	brain
38	chr22:28540200-28542400	Weak transcription	HSMM	muscle
39	chr22:28540200-28543200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr22:28540200-28558600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr22:28540200-28567800	Weak transcription	Gastric	stomach
42	chr22:28540400-28541200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr22:28540400-28542400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr22:28540400-28542800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr22:28540400-28542800	Weak transcription	Fetal Heart	heart
46	chr22:28540400-28543000	Weak transcription	NHDF-Ad	bronchial
47	chr22:28540400-28550000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr22:28540600-28541000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr22:28540800-28541000	Enhancers	Lung	lung
50	chr22:28540800-28542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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