Variant report

Variant	rs565641020
Chromosome Location	chr14:80010092-80010093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80001400-80010200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:80001600-80010200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:80005600-80011600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:80008400-80010800	Enhancers	Hela-S3	cervix
5	chr14:80008400-80013000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:80008800-80011800	Enhancers	Stomach Smooth Muscle	stomach
7	chr14:80008800-80012000	Enhancers	Osteobl	bone
8	chr14:80009000-80010600	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:80009200-80010400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:80009400-80010200	Enhancers	Pancreas	Pancrea
11	chr14:80009400-80012000	Enhancers	Rectal Smooth Muscle	rectum
12	chr14:80009600-80010400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:80009600-80010800	Enhancers	Aorta	Aorta
14	chr14:80009600-80011800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:80009600-80018000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:80009800-80010400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:80009800-80011200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:80009800-80011400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr14:80010000-80010200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:80010000-80010800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr14:80010000-80010800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr14:80010000-80011200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:80010000-80012000	Enhancers	NH-A	brain

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