Variant report

Variant	rs565655288
Chromosome Location	chr12:124496796-124496797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124440660..124443329-chr12:124494503..124496915,2	K562	blood:
2	chr12:124491034..124493507-chr12:124494589..124496940,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv820508	chr12:124495436-124500803	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv826535	chr12:124495436-124500803	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv819172	chr12:124496045-124496984	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv12431	chr12:124496106-124499990	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv976656	chr12:124496139-124498122	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv975536	chr12:124496139-124500626	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv560536	chr12:124496316-124499542	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1797434	chr12:124496316-124499839	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1841900	chr12:124496316-124499839	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv560537	chr12:124496316-124499839	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124461200-124496800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:124484400-124498400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:124485000-124498800	Strong transcription	Hela-S3	cervix
4	chr12:124488400-124498400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:124489200-124510400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:124490400-124498800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr12:124490400-124500400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:124491000-124497000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:124491000-124497600	Weak transcription	Colonic Mucosa	Colon
10	chr12:124491600-124498400	Strong transcription	Placenta	Placenta
11	chr12:124491600-124499400	Strong transcription	Duodenum Mucosa	Duodenum
12	chr12:124491800-124497800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr12:124492200-124496800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:124492200-124498000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:124492600-124499200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:124493000-124500200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:124493000-124501400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr12:124493000-124501600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:124493000-124503200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:124493200-124496800	Weak transcription	Stomach Mucosa	stomach
21	chr12:124493200-124501200	Strong transcription	Fetal Stomach	stomach
22	chr12:124493400-124497200	Weak transcription	Psoas Muscle	Psoas
23	chr12:124493400-124499800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr12:124493600-124497000	Weak transcription	Pancreas	Pancrea
25	chr12:124493600-124497000	Weak transcription	Right Ventricle	heart
26	chr12:124493600-124503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr12:124493600-124505400	Weak transcription	Right Atrium	heart
28	chr12:124493800-124499000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr12:124494200-124500600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:124494400-124497800	Strong transcription	NHDF-Ad	bronchial
31	chr12:124494400-124498000	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr12:124494400-124498000	Strong transcription	K562	blood
33	chr12:124494400-124498400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr12:124494400-124498600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr12:124494400-124498600	Strong transcription	Primary B cells from cord blood	blood
36	chr12:124494400-124499200	Strong transcription	Fetal Kidney	kidney
37	chr12:124494400-124500400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:124494600-124499400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr12:124494800-124498000	Strong transcription	HUVEC	blood vessel
40	chr12:124494800-124498400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:124494800-124498600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr12:124494800-124499400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr12:124495000-124497000	Genic enhancers	Fetal Intestine Large	intestine
44	chr12:124495000-124497000	Genic enhancers	Fetal Intestine Small	intestine
45	chr12:124495000-124498200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr12:124495000-124498400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr12:124495000-124498400	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr12:124495000-124498400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr12:124495000-124498400	Strong transcription	Dnd41	blood
50	chr12:124495000-124498600	Strong transcription	Muscle Satellite Cultured Cells	--

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