Variant report

Variant	rs565671208
Chromosome Location	chr2:172972976-172972977
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172970741..172972520-chr2:172972627..172974795,2	K562	blood:
2	chr2:172966348..172968822-chr2:172971677..172974375,3	MCF-7	breast:
3	chr2:172751399..172753053-chr2:172972072..172974852,2	MCF-7	breast:
4	chr2:172972600..172974190-chr2:172975792..172977649,2	K562	blood:

Variant related genes	Relation type
ENSG00000236651	Chromatin interaction
ENSG00000115844	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518335	chr2:172972971-172974749	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172968000-172974800	Weak transcription	Gastric	stomach
2	chr2:172970600-172973000	Enhancers	Pancreas	Pancrea
3	chr2:172970600-172973400	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr2:172970600-172973600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:172970800-172973200	Bivalent Enhancer	Fetal Stomach	stomach
6	chr2:172971200-172973600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr2:172971400-172973400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr2:172971600-172973400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr2:172971600-172973600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr2:172971600-172975200	Bivalent Enhancer	Fetal Thymus	thymus
11	chr2:172971800-172974200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:172971800-172974200	Weak transcription	NHEK	skin
13	chr2:172971800-172974400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:172971800-172974600	Weak transcription	HMEC	breast
15	chr2:172972200-172973000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:172972200-172973000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
17	chr2:172972200-172973200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:172972200-172973400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
19	chr2:172972200-172973800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
20	chr2:172972400-172973000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:172972400-172973000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
22	chr2:172972400-172973000	Enhancers	NHDF-Ad	bronchial
23	chr2:172972400-172973200	Bivalent Enhancer	Right Ventricle	heart
24	chr2:172972400-172973400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr2:172972600-172973000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
26	chr2:172972600-172973000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr2:172972600-172973000	Bivalent Enhancer	Esophagus	oesophagus
28	chr2:172972600-172973000	Bivalent Enhancer	Fetal Brain Male	brain
29	chr2:172972600-172973000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
30	chr2:172972600-172973200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:172972600-172973200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr2:172972600-172973200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
33	chr2:172972600-172973200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
34	chr2:172972600-172973200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:172972600-172973200	Bivalent Enhancer	Brain Substantia Nigra	brain
36	chr2:172972600-172973200	Bivalent Enhancer	Colon Smooth Muscle	Colon
37	chr2:172972600-172973200	Enhancers	Right Atrium	heart
38	chr2:172972600-172973200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
39	chr2:172972600-172973200	Bivalent Enhancer	HUVEC	blood vessel
40	chr2:172972600-172973200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
41	chr2:172972600-172973400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:172972600-172973400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:172972600-172973400	Bivalent Enhancer	Adipose Nuclei	Adipose
44	chr2:172972600-172973400	Bivalent Enhancer	Liver	Liver
45	chr2:172972600-172973400	Bivalent Enhancer	Spleen	Spleen
46	chr2:172972600-172973800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:172972600-172974200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:172972600-172974400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
49	chr2:172972600-172974800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
50	chr2:172972800-172973000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links