Variant report

Variant	rs565748015
Chromosome Location	chr12:123216652-123216653
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123212708..123217136-chr12:123232023..123237517,8	MCF-7	breast:
2	chr12:123214031..123216827-chr12:123235538..123237939,3	MCF-7	breast:
3	chr12:123215924..123217643-chr12:123233419..123235309,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256044	Chromatin interaction
ENSG00000139726	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123208200-123217000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr12:123213200-123218200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:123214800-123218600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr12:123215000-123216800	Enhancers	Primary T cells from cord blood	blood
5	chr12:123215200-123216800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:123215400-123217000	Weak transcription	Thymus	Thymus
7	chr12:123215400-123218800	Enhancers	Fetal Thymus	thymus
8	chr12:123215600-123218200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr12:123215600-123218600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:123215800-123216800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr12:123215800-123218000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:123215800-123218000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:123216000-123219000	Enhancers	Primary B cells from cord blood	blood
14	chr12:123216200-123218000	Enhancers	GM12878-XiMat	blood
15	chr12:123216400-123219000	Enhancers	Primary B cells from peripheral blood	blood
16	chr12:123216600-123217000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:123216600-123217400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr12:123216600-123217400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:123216600-123217600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr12:123216600-123217600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:123216600-123217600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr12:123216600-123218200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr12:123216600-123218400	Enhancers	HepG2	liver
24	chr12:123216600-123218600	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links