Variant report

Variant	rs565755609
Chromosome Location	chr3:99513689-99513690
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99510747..99513973-chr3:99518413..99521889,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv822193	chr3:99513060-99514929	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99492000-99517600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99502600-99518200	Weak transcription	HSMMtube	muscle
3	chr3:99502800-99518400	Weak transcription	NH-A	brain
4	chr3:99508400-99522200	Weak transcription	NHDF-Ad	bronchial
5	chr3:99508800-99518600	Strong transcription	Osteobl	bone
6	chr3:99510000-99523600	Weak transcription	HUVEC	blood vessel
7	chr3:99510400-99516200	Weak transcription	NHLF	lung
8	chr3:99510600-99515600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:99511800-99522800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:99512600-99515000	Weak transcription	Lung	lung
11	chr3:99512800-99515400	Weak transcription	Right Ventricle	heart
12	chr3:99513000-99514600	Strong transcription	NHEK	skin
13	chr3:99513000-99514800	Strong transcription	Aorta	Aorta
14	chr3:99513000-99515000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:99513000-99515000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:99513000-99515200	Strong transcription	HSMM	muscle
17	chr3:99513000-99515800	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr3:99513000-99518400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:99513200-99514200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:99513200-99514600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:99513200-99515800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:99513400-99513800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:99513600-99514600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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