Variant report

Variant	rs565788967
Chromosome Location	chr6:35618259-35618260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr6:35618101-35618308	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:35617138..35618908-chr6:35655522..35657648,2	K562	blood:
2	chr6:35613520..35615470-chr6:35617649..35619369,2	K562	blood:
3	chr6:35610364..35613285-chr6:35617762..35619344,2	K562	blood:
4	chr6:35617868..35619553-chr6:35622560..35625369,2	K562	blood:

Variant related genes	Relation type
ENSG00000212579	TF binding region
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv1812273	chr6:35597703-35629285	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1848884	chr6:35607571-35629669	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1811255	chr6:35614026-35628841	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1801712	chr6:35614026-35646435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv965719	chr6:35617589-35622224	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35588200-35630800	Weak transcription	Colonic Mucosa	Colon
2	chr6:35605000-35621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:35608200-35622400	Weak transcription	Fetal Heart	heart
4	chr6:35609000-35622400	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:35609000-35622400	Weak transcription	Esophagus	oesophagus
6	chr6:35609400-35622400	Weak transcription	Lung	lung
7	chr6:35609400-35622400	Weak transcription	Ovary	ovary
8	chr6:35609400-35630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:35609400-35630600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:35609400-35630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:35609400-35630800	Weak transcription	Gastric	stomach
12	chr6:35609600-35630200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:35609600-35630600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:35610000-35630800	Weak transcription	Spleen	Spleen
15	chr6:35610000-35630800	Weak transcription	HMEC	breast
16	chr6:35610400-35630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:35610600-35625000	Weak transcription	Right Ventricle	heart
18	chr6:35610600-35630000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:35610600-35630000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:35610600-35630000	Weak transcription	Pancreas	Pancrea
21	chr6:35610600-35630400	Weak transcription	HUVEC	blood vessel
22	chr6:35610600-35630800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:35610600-35631200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:35611200-35631000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:35611400-35630800	Weak transcription	Brain Substantia Nigra	brain
26	chr6:35611600-35630800	Weak transcription	Brain Anterior Caudate	brain
27	chr6:35611600-35631400	Weak transcription	Primary B cells from cord blood	blood
28	chr6:35612200-35630800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:35613400-35621800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:35613400-35629800	Weak transcription	NHEK	skin
31	chr6:35613400-35630800	Weak transcription	Small Intestine	intestine
32	chr6:35613600-35630800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:35613600-35630800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:35614000-35630800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:35614200-35618800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr6:35614200-35625600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:35614200-35630800	Weak transcription	Liver	Liver
38	chr6:35614400-35618600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:35614600-35619000	Weak transcription	Fetal Thymus	thymus
40	chr6:35614600-35619400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:35614600-35630800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr6:35614800-35625000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:35615000-35631000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:35615400-35618600	Weak transcription	K562	blood
45	chr6:35615400-35635200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr6:35615600-35618800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:35615600-35619200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:35615600-35620800	Weak transcription	GM12878-XiMat	blood
49	chr6:35615600-35622200	Weak transcription	HSMM	muscle
50	chr6:35615600-35630800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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