Variant report

Variant	rs565861
Chromosome Location	chr1:160711759-160711760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs510131	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs544518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs549295	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs549471	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs576627	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs577052	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7521486	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428532	chr1:160671125-160767708	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160708200-160715200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:160708600-160713000	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr1:160708800-160712000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:160708800-160712800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr1:160708800-160713400	Active TSS	Duodenum Mucosa	Duodenum
6	chr1:160709400-160712000	Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr1:160709400-160718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:160710200-160712400	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:160710400-160714000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:160710600-160711800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:160710800-160711800	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr1:160710800-160712000	Active TSS	Rectal Smooth Muscle	rectum
13	chr1:160710800-160713600	Enhancers	Spleen	Spleen
14	chr1:160711000-160715000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:160711200-160712800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:160711200-160717200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:160711400-160712400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr1:160711400-160713000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr1:160711400-160713400	Enhancers	K562	blood
20	chr1:160711400-160715400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr1:160711600-160711800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr1:160711600-160712000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr1:160711600-160712400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:160711600-160712400	Enhancers	Primary T cells from cord blood	blood
25	chr1:160711600-160714000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
26	chr1:160711600-160715200	Enhancers	Fetal Thymus	thymus
27	chr1:160711600-160715200	Enhancers	Thymus	Thymus

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