Variant report

Variant	rs565866417
Chromosome Location	chr6:33366553-33366554
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33362550..33366699-chr6:33373091..33374833,4	MCF-7	breast:
2	chr6:33255817..33257369-chr6:33364679..33367095,2	K562	blood:
3	chr6:33363619..33367715-chr6:33369432..33373076,4	K562	blood:
4	chr6:33365854..33369434-chr6:33385468..33388336,3	K562	blood:

Variant related genes	Relation type
ENSG00000227057	Chromatin interaction
ENSG00000204220	Chromatin interaction
ENSG00000197283	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000237649	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv969387	chr6:33365795-33371279	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33360000-33371000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:33360000-33377400	Weak transcription	Small Intestine	intestine
3	chr6:33360000-33377600	Weak transcription	Right Atrium	heart
4	chr6:33360400-33377600	Weak transcription	Esophagus	oesophagus
5	chr6:33360400-33377600	Weak transcription	Lung	lung
6	chr6:33360800-33371000	Weak transcription	Placenta	Placenta
7	chr6:33360800-33371200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:33360800-33377200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:33361000-33371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:33361000-33371200	Weak transcription	Gastric	stomach
11	chr6:33361000-33371400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:33361000-33372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:33361000-33377200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:33361200-33366600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:33361200-33370600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:33361200-33371000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:33361200-33371200	Weak transcription	Spleen	Spleen
18	chr6:33361200-33371400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:33361200-33377200	Weak transcription	Colonic Mucosa	Colon
20	chr6:33361200-33377800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:33361400-33371200	Weak transcription	Fetal Kidney	kidney
22	chr6:33361600-33369800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:33361600-33377200	Weak transcription	Primary B cells from cord blood	blood
24	chr6:33362200-33377600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:33362400-33371200	Weak transcription	Fetal Brain Female	brain
26	chr6:33362800-33376200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:33363000-33376400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:33363000-33376400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:33363200-33369200	Weak transcription	Fetal Lung	lung
30	chr6:33363200-33370600	Weak transcription	A549	lung
31	chr6:33363200-33371400	Weak transcription	Brain Germinal Matrix	brain
32	chr6:33363200-33377200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:33363200-33377200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:33363400-33367200	Weak transcription	NHDF-Ad	bronchial
35	chr6:33363400-33371000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:33363400-33376400	Strong transcription	Fetal Thymus	thymus
37	chr6:33363400-33377200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:33363400-33377200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:33363600-33366600	Weak transcription	NH-A	brain
40	chr6:33364000-33366800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:33364000-33368400	Weak transcription	NHLF	lung
42	chr6:33364000-33377200	Weak transcription	Fetal Heart	heart
43	chr6:33364600-33367600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:33364800-33367800	Strong transcription	HMEC	breast
45	chr6:33364800-33368400	Strong transcription	Thymus	Thymus
46	chr6:33365200-33376800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:33365400-33367000	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr6:33365400-33367400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr6:33365400-33367400	Strong transcription	HUVEC	blood vessel
50	chr6:33365400-33367600	Strong transcription	Primary neutrophils fromperipheralblood	blood

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