Variant report

Variant	rs565918229
Chromosome Location	chr14:31712563-31712564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31705909..31709311-chr14:31711142..31713834,3	K562	blood:
2	chr14:31705909..31710425-chr14:31710546..31713834,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31707800-31712800	Weak transcription	Lung	lung
2	chr14:31707800-31713400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:31707800-31730800	Weak transcription	Pancreas	Pancrea
4	chr14:31709000-31713800	Enhancers	K562	blood
5	chr14:31710600-31715200	Enhancers	Stomach Mucosa	stomach
6	chr14:31711400-31713000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:31711400-31713000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:31711400-31714000	Weak transcription	A549	lung
9	chr14:31711400-31716600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:31711600-31713200	Weak transcription	Small Intestine	intestine
11	chr14:31711600-31720400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:31711800-31713000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:31711800-31713600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr14:31712000-31712600	Weak transcription	HMEC	breast
15	chr14:31712000-31713200	Weak transcription	HepG2	liver
16	chr14:31712000-31714800	Weak transcription	Ovary	ovary
17	chr14:31712200-31714400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:31712200-31714800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:31712400-31712600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:31712400-31712600	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr14:31712400-31713800	Enhancers	Esophagus	oesophagus
22	chr14:31712400-31713800	Enhancers	Hela-S3	cervix
23	chr14:31712400-31714200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links