Variant report

Variant	rs565925407
Chromosome Location	chr20:23003528-23003529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3390601	chr20:23003076-23007103	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22996000-23006200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:23001000-23005800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr20:23001000-23008800	Weak transcription	Lung	lung
4	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:23001600-23005600	Enhancers	Stomach Mucosa	stomach
6	chr20:23002600-23004000	Enhancers	NHDF-Ad	bronchial
7	chr20:23002600-23004400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:23002600-23005600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:23002800-23004800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:23002800-23006200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr20:23003000-23005000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr20:23003000-23005200	Weak transcription	Thymus	Thymus
13	chr20:23003000-23005800	Weak transcription	Dnd41	blood
14	chr20:23003400-23003800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr20:23003400-23006000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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