Variant report

Variant	rs565933587
Chromosome Location	chr9:85351078-85351079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85346000-85351400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:85347200-85352200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:85347200-85353000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:85347600-85353400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:85348200-85361400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:85349000-85351600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:85349000-85352400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:85349400-85352400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:85349400-85352400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:85349800-85361600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:85350000-85364600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:85350400-85351200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:85351000-85356000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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