Variant report

Variant	rs565961939
Chromosome Location	chr3:177396734-177396735
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:177396390-177398716	SK-N-SH	brain:	n/a	n/a
2	GATA2	chr3:177396460-177396821	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177396417..177398253-chr3:177403984..177405833,2	MCF-7	breast:
2	chr3:177395868..177398215-chr3:177400550..177402752,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228561	TF binding region
ENSG00000228561	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752972	chr3:176924298-177425298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv4131	chr3:177366549-177399301	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2590986	chr3:177395894-177397383	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177383800-177397800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:177391200-177397600	Weak transcription	Right Atrium	heart
3	chr3:177391600-177396800	Weak transcription	Dnd41	blood
4	chr3:177391800-177397600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:177392000-177405400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:177392200-177396800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:177392200-177397200	Weak transcription	HMEC	breast
8	chr3:177392200-177397200	Weak transcription	Osteobl	bone
9	chr3:177392200-177397400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:177392200-177397600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:177392200-177397600	Weak transcription	Adipose Nuclei	Adipose
12	chr3:177392200-177397800	Weak transcription	NHLF	lung
13	chr3:177392200-177404400	Weak transcription	Ovary	ovary
14	chr3:177392400-177397200	Weak transcription	K562	blood
15	chr3:177392400-177397200	Weak transcription	NH-A	brain
16	chr3:177392400-177397400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:177392400-177397600	Weak transcription	NHDF-Ad	bronchial
18	chr3:177392400-177397800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:177392400-177418800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:177392600-177397400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:177392600-177397400	Weak transcription	Fetal Thymus	thymus
22	chr3:177392600-177397600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:177392600-177398600	Weak transcription	Spleen	Spleen
24	chr3:177392600-177399600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:177394000-177401000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:177394800-177404800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:177395000-177396800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:177395000-177396800	Weak transcription	Colon Smooth Muscle	Colon
29	chr3:177395000-177397000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:177395000-177406000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:177395000-177411600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:177395200-177397000	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr3:177395200-177397400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:177395200-177399600	Weak transcription	Stomach Mucosa	stomach
35	chr3:177395200-177400200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:177395400-177399600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:177395400-177400200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:177395600-177397400	Weak transcription	Fetal Lung	lung
39	chr3:177396000-177398600	Enhancers	Primary hematopoietic stem cells	blood
40	chr3:177396000-177401000	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr3:177396000-177401200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:177396400-177397400	Enhancers	HUVEC	blood vessel
43	chr3:177396400-177398200	Enhancers	Fetal Kidney	kidney
44	chr3:177396600-177396800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:177396600-177398000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:177396600-177398200	Enhancers	Fetal Heart	heart
47	chr3:177396600-177398800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:177396600-177399000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr3:177396600-177400600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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