Variant report

Variant	rs566037568
Chromosome Location	chr6:31561178-31561179
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr6:31560361-31561321	GM12891	blood:	n/a	chr6:31561084-31561093 chr6:31561079-31561100 chr6:31561084-31561094 chr6:31561081-31561096 chr6:31561078-31561100 chr6:31560947-31560959 chr6:31561083-31561093 chr6:31561085-31561092 chr6:31561084-31561095 chr6:31561083-31561093 chr6:31561082-31561094 chr6:31561085-31561093 chr6:31561084-31561095
2	POU2F2	chr6:31560249-31561251	GM12891	blood:	n/a	chr6:31561084-31561093 chr6:31561079-31561100 chr6:31561084-31561094 chr6:31561081-31561096 chr6:31561078-31561100 chr6:31560947-31560959 chr6:31561083-31561093 chr6:31561085-31561092 chr6:31561084-31561095 chr6:31561083-31561093 chr6:31561082-31561094 chr6:31561085-31561093 chr6:31561084-31561095
3	POU2F2	chr6:31560599-31561324	GM12878	blood:	n/a	chr6:31561084-31561093 chr6:31561079-31561100 chr6:31561084-31561094 chr6:31561081-31561096 chr6:31561078-31561100 chr6:31560947-31560959 chr6:31561083-31561093 chr6:31561085-31561092 chr6:31561084-31561095 chr6:31561083-31561093 chr6:31561082-31561094 chr6:31561085-31561093 chr6:31561084-31561095
4	ARID3A	chr6:31560971-31561205	K562	blood:	n/a	n/a
5	PML	chr6:31560372-31561275	GM12878	blood:	n/a	n/a
6	MTA3	chr6:31560041-31561321	GM12878	blood:	n/a	n/a
7	BCLAF1	chr6:31560531-31561301	GM12878	blood:	n/a	n/a
8	STAT5A	chr6:31560096-31561266	GM12878	blood:	n/a	chr6:31560993-31561002 chr6:31560980-31560992 chr6:31560783-31560795 chr6:31560992-31561001
9	IRF1	chr6:31561051-31561186	K562	blood:	n/a	n/a
10	TBL1XR1	chr6:31560619-31561221	GM12878	blood:	n/a	n/a
11	ZNF384	chr6:31561004-31561268	K562	blood:	n/a	n/a
12	RCOR1	chr6:31560454-31561184	K562	blood:	n/a	n/a
13	TEAD4	chr6:31560423-31561295	K562	blood:	n/a	n/a
14	RUNX3	chr6:31560230-31561299	GM12878	blood:	n/a	n/a
15	POU2F2	chr6:31560831-31561262	GM12878	blood:	n/a	chr6:31561084-31561093 chr6:31561079-31561100 chr6:31561084-31561094 chr6:31561081-31561096 chr6:31561078-31561100 chr6:31560947-31560959 chr6:31561083-31561093 chr6:31561085-31561092 chr6:31561084-31561095 chr6:31561083-31561093 chr6:31561082-31561094 chr6:31561085-31561093 chr6:31561084-31561095
16	FOXM1	chr6:31560540-31561245	GM12878	blood:	n/a	n/a
17	ZNF384	chr6:31560889-31561292	GM12878	blood:	n/a	n/a
18	RUNX3	chr6:31560368-31561310	GM12878	blood:	n/a	n/a
19	SP1	chr6:31560601-31561180	GM12878	blood:	n/a	chr6:31560783-31560797
20	IRF1	chr6:31561016-31561183	K562	blood:	n/a	n/a
21	NFIC	chr6:31560580-31561200	GM12878	blood:	n/a	n/a
22	BCLAF1	chr6:31560337-31561237	GM12878	blood:	n/a	n/a
23	NFIC	chr6:31560089-31561349	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31513116..31516827-chr6:31558104..31561639,4	K562	blood:
2	chr6:31560247..31562390-chr6:31587195..31589122,2	K562	blood:
3	chr6:31513113..31516557-chr6:31559255..31561759,3	K562	blood:
4	chr6:31554501..31557206-chr6:31559378..31562333,2	MCF-7	breast:
5	chr6:31509610..31511925-chr6:31559593..31562422,2	K562	blood:
6	chr6:31555093..31557272-chr6:31561028..31563180,2	K562	blood:

Variant related genes	Relation type
NCR3	TF binding region
ENSG00000198563	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000204482	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000254870	Chromatin interaction
ENSG00000204498	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
2	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
3	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
4	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
5	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
6	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
7	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
8	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
9	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
10	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
11	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
12	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
13	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
14	nsv884418	chr6:31525448-31741078	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
15	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
16	esv3335402	chr6:31561101-31561499	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31550000-31583200	Weak transcription	Right Atrium	heart
2	chr6:31557600-31566200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:31559200-31562400	Enhancers	Fetal Thymus	thymus
4	chr6:31559800-31561200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
5	chr6:31560000-31561200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:31560200-31561200	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:31560200-31561200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr6:31560200-31561200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr6:31560200-31561200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr6:31560200-31561200	Flanking Active TSS	GM12878-XiMat	blood
11	chr6:31560200-31561600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr6:31560200-31561600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:31560200-31561800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:31560200-31561800	Enhancers	K562	blood
15	chr6:31560200-31562600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:31560400-31561200	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:31560400-31561200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:31560400-31561200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr6:31560400-31561200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:31560400-31561600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:31560600-31561200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:31560800-31561200	Enhancers	Dnd41	blood
23	chr6:31560800-31561800	Enhancers	Colonic Mucosa	Colon
24	chr6:31560800-31564600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:31560800-31566000	Weak transcription	Spleen	Spleen
26	chr6:31560800-31568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:31561000-31561600	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:31561000-31561800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:31561000-31561800	Enhancers	Thymus	Thymus
30	chr6:31561000-31562400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr6:31561000-31564400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:31561000-31564400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:31561000-31566800	Enhancers	Primary B cells from peripheral blood	blood
34	chr6:31561000-31566800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr6:31561000-31568400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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