Variant report

Variant	rs566091704
Chromosome Location	chrX:31442170-31442171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:31436407..31439307-chrX:31440950..31442473,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3447095	chrX:31441731-31519629	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31441400-31442200	Active TSS	Ovary	ovary
2	chrX:31441600-31442200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chrX:31441600-31442200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chrX:31441600-31442200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chrX:31441600-31442600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chrX:31441600-31442800	Flanking Active TSS	Hela-S3	cervix
7	chrX:31441800-31442200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chrX:31441800-31442200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chrX:31441800-31442200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chrX:31441800-31442200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chrX:31441800-31442200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chrX:31441800-31442200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chrX:31441800-31442200	Active TSS	Brain Angular Gyrus	brain
14	chrX:31441800-31442200	Enhancers	Brain Cingulate Gyrus	brain
15	chrX:31441800-31442200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chrX:31441800-31442400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chrX:31441800-31442400	Active TSS	Brain Anterior Caudate	brain
18	chrX:31441800-31442400	Enhancers	Fetal Heart	heart
19	chrX:31441800-31442600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chrX:31441800-31442600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chrX:31441800-31442600	Bivalent/Poised TSS	Fetal Lung	lung
22	chrX:31441800-31442600	Enhancers	HSMMtube	muscle
23	chrX:31441800-31442600	Enhancers	NHDF-Ad	bronchial
24	chrX:31442000-31442400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links