Variant report

Variant	rs566108511
Chromosome Location	chr4:78993959-78993960
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78982293..78984651-chr4:78992521..78995488,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv967999	chr4:78991248-78995210	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3350741	chr4:78993717-78994220	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv247434	chr4:78993959-78993959	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78980800-78998200	Weak transcription	Pancreas	Pancrea
2	chr4:78981000-78995600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:78981200-79016600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:78982200-78998200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:78983400-78996000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:78983400-79001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:78986200-78995600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:78987000-78995600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:78987400-78994400	Weak transcription	Fetal Kidney	kidney
10	chr4:78988000-78994000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:78988800-79002600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:78988800-79003000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:78990800-78996000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:78991400-78995600	Weak transcription	Fetal Intestine Large	intestine
15	chr4:78991400-78996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:78991400-79000600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:78991400-79000800	Weak transcription	Psoas Muscle	Psoas
18	chr4:78992200-79006800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:78992400-78994400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:78992800-78995200	Weak transcription	HepG2	liver
21	chr4:78992800-78995800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:78992800-78997600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:78993200-78994400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr4:78993200-78995400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:78993600-78995000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:78993800-78994800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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