Variant report

Variant	rs566153
Chromosome Location	chr1:160765430-160765431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr1:160765381-160766321	GM12878	blood:	n/a	n/a
2	MTA3	chr1:160765371-160766651	GM12878	blood:	n/a	n/a
3	NFIC	chr1:160765421-160766305	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
LY9	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs479737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428532	chr1:160671125-160767708	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160759400-160766800	Weak transcription	Spleen	Spleen
2	chr1:160764200-160765800	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:160764600-160765800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:160764600-160766000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:160764800-160765800	Enhancers	Primary T cells from cord blood	blood
6	chr1:160764800-160765800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr1:160764800-160765800	Enhancers	Fetal Thymus	thymus
8	chr1:160764800-160766000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:160764800-160766000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:160764800-160766000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:160765000-160765800	Enhancers	Primary B cells from cord blood	blood
12	chr1:160765000-160765800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:160765000-160766000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:160765000-160767000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:160765200-160765600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr1:160765200-160766000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:160765200-160766000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:160765200-160766000	Enhancers	Thymus	Thymus
19	chr1:160765400-160765600	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:160765400-160765800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:160765400-160765800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr1:160765400-160765800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr1:160765400-160767000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr1:160765400-160768400	Flanking Active TSS	GM12878-XiMat	blood
25	chr1:160765400-160772200	Enhancers	Dnd41	blood

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