Variant report

Variant	rs566167575
Chromosome Location	chr6:142839468-142839469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3352737	chr6:142839327-142839592	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142839200-142839600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr6:142839200-142839600	Enhancers	Fetal Lung	lung
3	chr6:142839200-142839600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:142839200-142839600	Enhancers	Fetal Thymus	thymus
5	chr6:142839200-142839800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:142839200-142840000	Enhancers	Primary T cells from cord blood	blood
7	chr6:142839200-142840200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:142839200-142840200	Enhancers	Dnd41	blood
9	chr6:142839200-142840400	Enhancers	Placenta	Placenta
10	chr6:142839200-142840400	Enhancers	HSMM	muscle
11	chr6:142839200-142840400	Enhancers	HSMMtube	muscle
12	chr6:142839200-142840600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:142839200-142840600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:142839400-142839600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:142839400-142840000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:142839400-142840000	Enhancers	Esophagus	oesophagus
17	chr6:142839400-142840600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:142839400-142840600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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