Variant report

Variant	rs566177531
Chromosome Location	chr1:161130370-161130371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:161130260-161130410	GM12866	blood:	n/a	n/a
2	POLR2A	chr1:161128573-161130479	MCF10A-Er-Src	breast:	n/a	n/a
3	HCFC1	chr1:161128410-161130377	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr1:161128335-161130429	K562	blood:	n/a	n/a
5	POLR2A	chr1:161130236-161130932	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr1:161128550-161131005	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr1:161128754-161130534	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr1:161128410-161130469	HepG2	liver:	n/a	n/a
9	POLR2A	chr1:161130128-161130886	K562	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:161100691..161104235-chr1:161128857..161130819,4	K562	blood:
2	chr1:161067905..161072134-chr1:161127935..161131211,3	MCF-7	breast:
3	chr1:160231832..160233674-chr1:161127837..161130606,2	MCF-7	breast:
4	chr1:161101050..161105947-chr1:161126092..161130683,11	K562	blood:
5	chr1:161128751..161130724-chr1:161170850..161173844,2	MCF-7	breast:
6	chr1:161129146..161131988-chr1:161170465..161172275,2	MCF-7	breast:
7	chr1:161085978..161089990-chr1:161127865..161134037,11	K562	blood:
8	chr1:161052998..161054950-chr1:161128036..161130636,2	MCF-7	breast:
9	chr1:161011414..161013032-chr1:161129851..161132212,2	K562	blood:
10	chr1:160989693..160991522-chr1:161127596..161130418,2	MCF-7	breast:
11	chr1:161101282..161104235-chr1:161127986..161130833,4	MCF-7	breast:
12	chr1:161085658..161090812-chr1:161125926..161133105,17	K562	blood:

No data

Variant related genes	Relation type
USP21	TF binding region
ENSG00000224985	TF binding region
ENSG00000158864	Chromatin interaction
ENSG00000162755	Chromatin interaction
ENSG00000158769	Chromatin interaction
ENSG00000143256	Chromatin interaction
ENSG00000228917	Chromatin interaction
ENSG00000158796	Chromatin interaction
ENSG00000158773	Chromatin interaction
ENSG00000132716	Chromatin interaction
ENSG00000158793	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3489555	chr1:161129735-161131477	Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
3	esv3489556	chr1:161129735-161131477	Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161128600-161130800	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr1:161129000-161130400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr1:161129000-161130400	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr1:161129600-161130400	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr1:161129600-161130400	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr1:161129600-161130400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:161129600-161130400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:161129600-161130400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:161129600-161130400	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr1:161129600-161130400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr1:161129600-161130400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr1:161129600-161130400	Flanking Active TSS	Thymus	Thymus
13	chr1:161129600-161130600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr1:161129600-161130600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:161129600-161130800	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr1:161129600-161130800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr1:161129600-161130800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr1:161129600-161131000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr1:161129600-161131000	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr1:161129800-161130400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:161129800-161130400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:161129800-161130400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:161129800-161130400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:161129800-161130400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr1:161129800-161130400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:161129800-161130400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:161129800-161130400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:161129800-161130400	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr1:161129800-161130400	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr1:161129800-161130400	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr1:161129800-161130400	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr1:161129800-161130400	Flanking Active TSS	Brain Substantia Nigra	brain
33	chr1:161129800-161130400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr1:161129800-161130400	Flanking Active TSS	Fetal Brain Male	brain
35	chr1:161129800-161130400	Flanking Active TSS	Fetal Brain Female	brain
36	chr1:161129800-161130400	Flanking Active TSS	Fetal Lung	lung
37	chr1:161129800-161130400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
38	chr1:161129800-161130400	Flanking Active TSS	Rectal Smooth Muscle	rectum
39	chr1:161129800-161130400	Flanking Active TSS	GM12878-XiMat	blood
40	chr1:161129800-161130400	Flanking Active TSS	NH-A	brain
41	chr1:161129800-161130400	Flanking Active TSS	NHDF-Ad	bronchial
42	chr1:161129800-161130400	Flanking Active TSS	NHEK	skin
43	chr1:161129800-161130400	Flanking Active TSS	Osteobl	bone
44	chr1:161129800-161130600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr1:161129800-161130600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr1:161129800-161130600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:161129800-161130600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:161129800-161130600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr1:161129800-161130600	Flanking Active TSS	Hela-S3	cervix
50	chr1:161129800-161133200	Transcr. at gene 5' and 3'	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links