Variant report

Variant	rs566185
Chromosome Location	chr22:27567320-27567321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:27566640..27570192-chr22:27574924..27577106,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1056	0.90[ASN][1000 genomes]
rs475069	0.93[ASN][1000 genomes]
rs510197	0.84[ASN][1000 genomes]
rs537488	0.84[ASN][1000 genomes]
rs550260	0.88[ASN][1000 genomes]
rs556342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713815	0.93[ASN][1000 genomes]
rs760522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs849453	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917333	chr22:26931825-27692024	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	142 gene(s)	inside rSNPs	diseases
2	esv34168	chr22:27289097-27678031	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv459861	chr22:27549141-27575542	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv588873	chr22:27549141-27575542	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2762118	chr22:27549920-27579317	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv459863	chr22:27550764-27575542	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv588874	chr22:27550764-27575542	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1063215	chr22:27557040-27581253	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27557200-27569800	Weak transcription	Fetal Brain Female	brain
2	chr22:27566000-27567400	Enhancers	HSMM	muscle
3	chr22:27566000-27567800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr22:27566000-27568000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr22:27566200-27567400	Enhancers	Adipose Nuclei	Adipose
6	chr22:27566200-27567400	Enhancers	Rectal Smooth Muscle	rectum
7	chr22:27566200-27567400	Enhancers	Stomach Smooth Muscle	stomach
8	chr22:27566400-27567400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr22:27566600-27567400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr22:27566600-27567400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr22:27566600-27568000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr22:27566600-27570600	Weak transcription	Spleen	Spleen
13	chr22:27566800-27568400	Weak transcription	HUVEC	blood vessel
14	chr22:27566800-27571200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr22:27567000-27567400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr22:27567000-27567400	Enhancers	Osteobl	bone
17	chr22:27567000-27570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr22:27567000-27570600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr22:27567200-27567800	Enhancers	Brain Germinal Matrix	brain
20	chr22:27567200-27569800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr22:27567200-27569800	Weak transcription	HSMMtube	muscle
22	chr22:27567200-27570600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr22:27567200-27572600	Weak transcription	Ovary	ovary

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