Variant report

Variant	rs566273531
Chromosome Location	chr1:197665343-197665344
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873074	chr1:197464448-197698103	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv873075	chr1:197464448-197714851	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv873076	chr1:197529218-197689967	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv437263	chr1:197599030-197722240	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv427908	chr1:197611569-197767362	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv873077	chr1:197615391-197698103	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv548873	chr1:197664905-197694037	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197653000-197665400	Weak transcription	Osteobl	bone
2	chr1:197657000-197677000	Weak transcription	Ovary	ovary
3	chr1:197658200-197668200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:197659400-197665800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:197659400-197674800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:197659600-197665600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:197659600-197665600	Weak transcription	K562	blood
8	chr1:197659600-197667000	Weak transcription	Primary B cells from cord blood	blood
9	chr1:197659800-197674400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:197664400-197665600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:197664400-197666000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:197665000-197666400	Enhancers	NHEK	skin
13	chr1:197665200-197665400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:197665200-197665800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:197665200-197666000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:197665200-197666200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:197665200-197666400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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