Variant report

Variant	rs566293639
Chromosome Location	chr4:15458852-15458853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15233266..15233775-chr4:15458638..15459594,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv2760903	chr4:15458598-15464619	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:15453600-15459000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:15453600-15459000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:15454200-15459000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:15454800-15459000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:15454800-15459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:15456200-15459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:15456200-15459800	Enhancers	NHLF	lung
9	chr4:15456400-15459800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:15457400-15459000	Weak transcription	Brain Substantia Nigra	brain
11	chr4:15457600-15459000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:15458000-15459600	Enhancers	Aorta	Aorta
13	chr4:15458200-15459600	Enhancers	Primary hematopoietic stem cells	blood
14	chr4:15458200-15459800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:15458200-15459800	Enhancers	Ovary	ovary
16	chr4:15458400-15459000	Enhancers	Stomach Smooth Muscle	stomach
17	chr4:15458400-15459200	Enhancers	Spleen	Spleen
18	chr4:15458400-15459400	Enhancers	Fetal Brain Female	brain
19	chr4:15458400-15459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:15458400-15459800	Enhancers	Primary B cells from peripheral blood	blood
21	chr4:15458400-15460000	Enhancers	Fetal Kidney	kidney
22	chr4:15458600-15459000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:15458600-15459000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:15458600-15459200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr4:15458600-15459200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:15458600-15459200	Enhancers	Placenta	Placenta
27	chr4:15458600-15459200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr4:15458600-15459400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr4:15458600-15459600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:15458600-15459600	Enhancers	Fetal Stomach	stomach
31	chr4:15458600-15461200	Enhancers	Fetal Brain Male	brain
32	chr4:15458800-15459000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr4:15458800-15459200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:15458800-15459200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:15458800-15459200	Enhancers	Fetal Lung	lung
36	chr4:15458800-15459200	Enhancers	Fetal Thymus	thymus
37	chr4:15458800-15459200	Enhancers	NHDF-Ad	bronchial
38	chr4:15458800-15459400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr4:15458800-15459400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:15458800-15459400	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr4:15458800-15459400	Enhancers	Primary T cells from cord blood	blood
42	chr4:15458800-15459400	Enhancers	GM12878-XiMat	blood
43	chr4:15458800-15459400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr4:15458800-15459600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:15458800-15459600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:15458800-15459600	Enhancers	Adipose Nuclei	Adipose
47	chr4:15458800-15459600	Enhancers	Liver	Liver
48	chr4:15458800-15459600	Enhancers	Brain Hippocampus Middle	brain
49	chr4:15458800-15459600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:15458800-15459600	Enhancers	Colon Smooth Muscle	Colon

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