Variant report

Variant	rs566323201
Chromosome Location	chr11:93919466-93919467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1038294	chr11:93918837-93982605	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93897800-93920000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:93901400-93921200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:93904800-93920000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93905400-93919600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:93907200-93919600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:93912200-93921000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:93913600-93929400	Weak transcription	Gastric	stomach
8	chr11:93913800-93921400	Weak transcription	Fetal Brain Male	brain
9	chr11:93914400-93920400	Weak transcription	Primary B cells from cord blood	blood
10	chr11:93914800-93919800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:93914800-93920400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:93914800-93920600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:93914800-93921000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:93914800-93921600	Weak transcription	Thymus	Thymus
15	chr11:93914800-93926200	Weak transcription	Esophagus	oesophagus
16	chr11:93914800-93926200	Weak transcription	Spleen	Spleen
17	chr11:93915000-93921000	Weak transcription	Right Ventricle	heart
18	chr11:93915600-93920400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:93915600-93929400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:93916200-93920800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:93916200-93921200	Weak transcription	Primary T cells from cord blood	blood
22	chr11:93916400-93922000	Weak transcription	Brain Germinal Matrix	brain
23	chr11:93916800-93920200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:93916800-93920200	Enhancers	NHLF	lung
25	chr11:93916800-93920600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:93916800-93926200	Weak transcription	HMEC	breast
27	chr11:93917000-93919600	Enhancers	HSMM	muscle
28	chr11:93917000-93920800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr11:93917200-93919800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:93917200-93919800	Weak transcription	A549	lung
31	chr11:93917200-93920200	Weak transcription	Dnd41	blood
32	chr11:93917200-93926200	Weak transcription	NHEK	skin
33	chr11:93917400-93920000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:93917400-93921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:93917400-93921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:93917400-93922000	Weak transcription	Lung	lung
37	chr11:93917600-93919800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:93917600-93920000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:93917600-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:93917600-93925600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:93917600-93934200	Weak transcription	Fetal Intestine Small	intestine
42	chr11:93917800-93920400	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:93917800-93926400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:93918000-93919800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:93918000-93920400	Enhancers	NHDF-Ad	bronchial
46	chr11:93918000-93925600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:93918600-93919600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:93918600-93920000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:93918600-93921200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:93918800-93919600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links