Variant report

Variant	rs566326958
Chromosome Location	chr11:18401909-18401910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18401037..18403856-chr11:18413417..18417997,5	K562	blood:
2	chr11:18401460..18405154-chr11:18406672..18408749,3	K562	blood:

Variant related genes	Relation type
ENSG00000134333	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv933836	chr11:18300254-18440933	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1047049	chr11:18359702-18520008	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv540955	chr11:18359702-18520008	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	esv1811183	chr11:18389643-18432437	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv520101	chr11:18401531-18405510	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18345000-18405000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18387600-18404200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:18387600-18404400	Weak transcription	Esophagus	oesophagus
4	chr11:18387600-18404800	Weak transcription	Pancreas	Pancrea
5	chr11:18387800-18404400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:18388000-18405000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:18388400-18402600	Weak transcription	Hela-S3	cervix
8	chr11:18388800-18404400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:18389200-18404600	Weak transcription	Thymus	Thymus
10	chr11:18390000-18404400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:18390000-18404400	Weak transcription	Fetal Brain Female	brain
12	chr11:18390200-18404200	Weak transcription	Fetal Thymus	thymus
13	chr11:18390400-18404000	Weak transcription	NHDF-Ad	bronchial
14	chr11:18390400-18404200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:18390400-18404200	Weak transcription	HMEC	breast
16	chr11:18390400-18404600	Weak transcription	Primary B cells from cord blood	blood
17	chr11:18390400-18404800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:18390600-18404200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:18390600-18404200	Weak transcription	Adipose Nuclei	Adipose
20	chr11:18390600-18404200	Weak transcription	Osteobl	bone
21	chr11:18390800-18404200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:18391200-18404200	Weak transcription	HSMM	muscle
23	chr11:18391600-18404200	Weak transcription	A549	lung
24	chr11:18393000-18404200	Weak transcription	HSMMtube	muscle
25	chr11:18393000-18404400	Weak transcription	Primary T cells from cord blood	blood
26	chr11:18393600-18404200	Weak transcription	HepG2	liver
27	chr11:18400400-18404200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:18400400-18404200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:18400400-18404200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:18400400-18404400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:18401200-18404200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:18401600-18404200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:18401600-18405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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