Variant report

Variant	rs566364941
Chromosome Location	chr1:223884287-223884288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223882722..223885299-chr1:223910440..223912763,2	K562	blood:
2	chr1:223882393..223884567-chr1:223898139..223900023,2	MCF-7	breast:
3	chr1:223882685..223886008-chr1:223887424..223890701,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162909	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3361888	chr1:223725597-224114846	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1007380	chr1:223834380-224042190	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv535310	chr1:223834380-224042190	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv34082	chr1:223851018-224144509	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv3450114	chr1:223883808-223884305	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223876400-223885600	Weak transcription	A549	lung
2	chr1:223881800-223887000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:223882800-223884400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:223883600-223887800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:223883800-223884400	Enhancers	K562	blood
6	chr1:223883800-223884600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:223883800-223887600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:223884000-223884400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr1:223884000-223884400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:223884000-223884400	Enhancers	Pancreas	Pancrea
11	chr1:223884000-223888400	Weak transcription	Right Atrium	heart
12	chr1:223884200-223884400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:223884200-223884400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:223884200-223884400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:223884200-223884400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:223884200-223884400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:223884200-223884400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:223884200-223885600	Weak transcription	NHLF	lung
19	chr1:223884200-223885800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:223884200-223885800	Weak transcription	HSMM	muscle
21	chr1:223884200-223885800	Weak transcription	Osteobl	bone
22	chr1:223884200-223886200	Weak transcription	NH-A	brain
23	chr1:223884200-223887600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:223884200-223888000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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