Variant report

Variant	rs566369142
Chromosome Location	chr4:3363611-3363612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3354561..3356756-chr4:3362854..3364509,2	MCF-7	breast:
2	chr4:3362461..3364833-chr4:3423756..3426600,2	MCF-7	breast:
3	chr4:3362735..3364977-chr4:3371568..3374797,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159788	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv878456	chr4:3215835-3467519	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv878462	chr4:3311548-3505448	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1007847	chr4:3317904-3527357	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv537001	chr4:3317904-3527357	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv3360977	chr4:3362254-3365952	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3374547	chr4:3362704-3365502	Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3437138	chr4:3362854-3365952	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3334000-3370600	Weak transcription	Right Atrium	heart
2	chr4:3344400-3367600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:3346600-3363800	Weak transcription	Fetal Brain Female	brain
4	chr4:3346600-3364600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:3347400-3364800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:3348200-3367400	Weak transcription	Fetal Heart	heart
7	chr4:3348400-3367600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:3350400-3364000	Weak transcription	Spleen	Spleen
9	chr4:3350800-3364200	Weak transcription	Pancreas	Pancrea
10	chr4:3350800-3367600	Weak transcription	Ovary	ovary
11	chr4:3354200-3363800	Weak transcription	Brain Germinal Matrix	brain
12	chr4:3354600-3364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:3354800-3368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:3355000-3367800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:3355200-3368400	Weak transcription	Fetal Intestine Small	intestine
16	chr4:3356000-3365000	Weak transcription	Fetal Stomach	stomach
17	chr4:3356600-3364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:3356600-3368000	Weak transcription	Fetal Intestine Large	intestine
19	chr4:3358200-3367800	Weak transcription	HepG2	liver
20	chr4:3358800-3369000	Weak transcription	Fetal Lung	lung
21	chr4:3360400-3370000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:3360600-3364600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:3360600-3365200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:3360600-3370000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr4:3361200-3366200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:3361400-3370000	Weak transcription	HSMM	muscle
27	chr4:3361600-3364200	Weak transcription	Fetal Brain Male	brain
28	chr4:3361600-3364400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:3361600-3365000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:3361600-3365200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr4:3361600-3365200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:3361600-3365400	Weak transcription	Primary T cells from cord blood	blood
33	chr4:3361800-3366000	Weak transcription	Lung	lung
34	chr4:3362800-3365600	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:3362800-3369200	Weak transcription	HSMMtube	muscle
36	chr4:3363000-3364600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:3363000-3365200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:3363200-3363800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr4:3363200-3364200	Weak transcription	Fetal Kidney	kidney
40	chr4:3363400-3364400	Weak transcription	Esophagus	oesophagus
41	chr4:3363600-3363800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:3363600-3364600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:3363600-3365000	Enhancers	Right Ventricle	heart
44	chr4:3363600-3368400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:3363600-3371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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