Variant report

Variant	rs566376962
Chromosome Location	chr1:220133456-220133457
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427930	chr1:220120379-220333434	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	744 gene(s)	inside rSNPs	diseases
2	nsv998124	chr1:220132739-220189211	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
3	esv3347973	chr1:220132829-220135427	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region	2 gene(s)	inside rSNPs	n/a
4	esv3371730	chr1:220132854-220135702	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region	2 gene(s)	inside rSNPs	n/a
5	esv3419804	chr1:220133229-220135027	Enhancers Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220129200-220145800	Weak transcription	HepG2	liver
2	chr1:220132000-220138800	Weak transcription	Aorta	Aorta
3	chr1:220132200-220144200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:220132400-220133600	Enhancers	Fetal Intestine Large	intestine
5	chr1:220132400-220143200	Weak transcription	Colonic Mucosa	Colon
6	chr1:220132600-220133600	Enhancers	Fetal Intestine Small	intestine
7	chr1:220132800-220141000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:220132800-220177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:220133000-220133600	Enhancers	Small Intestine	intestine
10	chr1:220133000-220133600	Enhancers	K562	blood
11	chr1:220133000-220141200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:220133400-220133600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:220133400-220138600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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