Variant report

Variant	rs566413334
Chromosome Location	chr11:108764158-108764159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2761707	chr11:108763836-108772204	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
3	chr11:108757800-108766400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:108757800-108766800	Weak transcription	Stomach Mucosa	stomach
5	chr11:108758400-108766800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:108758600-108764600	Weak transcription	A549	lung
7	chr11:108758600-108766400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:108759400-108766000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:108759600-108766400	Weak transcription	Osteobl	bone
10	chr11:108760800-108767800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:108761800-108765000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:108761800-108766000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:108761800-108766400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:108761800-108767000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:108762000-108766000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:108762000-108767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:108762200-108764400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:108762400-108765800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:108763000-108764600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:108763000-108766000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:108763200-108764800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:108763200-108764800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:108763200-108764800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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