Variant report

Variant	rs566414109
Chromosome Location	chr4:107217429-107217430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:107215261..107218209-chr4:107235780..107238587,4	MCF-7	breast:
2	chr4:107217078..107218792-chr4:107237509..107239809,2	K562	blood:
3	chr4:107216359..107217869-chr4:107220445..107222881,2	K562	blood:

Variant related genes	Relation type
ENSG00000145348	Chromatin interaction
ENSG00000164022	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
5	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
6	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
7	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:107194400-107221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:107194800-107227600	Weak transcription	Brain Angular Gyrus	brain
10	chr4:107198800-107235600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:107201400-107227800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:107202200-107219400	Weak transcription	Fetal Brain Male	brain
13	chr4:107202800-107236000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:107204000-107235800	Weak transcription	Psoas Muscle	Psoas
15	chr4:107204000-107236200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:107204200-107220400	Weak transcription	Fetal Heart	heart
17	chr4:107205600-107236000	Weak transcription	Brain Anterior Caudate	brain
18	chr4:107205800-107227600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:107207000-107227600	Weak transcription	Brain Substantia Nigra	brain
20	chr4:107207800-107217600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr4:107208000-107217600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:107208000-107218200	Strong transcription	Primary B cells from cord blood	blood
23	chr4:107208000-107223000	Weak transcription	Colonic Mucosa	Colon
24	chr4:107208000-107229600	Weak transcription	Aorta	Aorta
25	chr4:107208200-107223200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:107208800-107222600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:107208800-107226000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr4:107209000-107223400	Weak transcription	NHLF	lung
29	chr4:107209000-107226800	Weak transcription	NHEK	skin
30	chr4:107209000-107229400	Weak transcription	GM12878-XiMat	blood
31	chr4:107209000-107231200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr4:107209200-107224600	Weak transcription	K562	blood
33	chr4:107209200-107236000	Weak transcription	HMEC	breast
34	chr4:107209600-107217800	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr4:107211000-107217800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:107211000-107219000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:107211000-107226200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr4:107211400-107218000	Strong transcription	Liver	Liver
39	chr4:107211600-107221400	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr4:107211800-107217600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:107211800-107217600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:107211800-107217600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:107211800-107217600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr4:107211800-107218200	Strong transcription	HepG2	liver
45	chr4:107211800-107218400	Strong transcription	Primary T cells from cord blood	blood
46	chr4:107211800-107221800	Strong transcription	Fetal Thymus	thymus
47	chr4:107211800-107223800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:107211800-107225200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:107212200-107234400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:107212400-107227800	Weak transcription	Fetal Brain Female	brain

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