Variant report

Variant	rs566439645
Chromosome Location	chr6:35480227-35480228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr6:35479840-35480341	K562	blood:	n/a	n/a

Variant related genes	Relation type
TULP1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
3	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1022435	chr6:35476562-35556141	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1034786	chr6:35476562-35564799	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1031987	chr6:35476562-35579375	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	esv3421979	chr6:35478924-35481222	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35478600-35480800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:35478800-35480400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr6:35478800-35480800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35479200-35480400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
5	chr6:35479400-35480400	Enhancers	Fetal Lung	lung
6	chr6:35479400-35480600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:35479400-35480600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:35479600-35480400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:35479600-35480600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:35479600-35480800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:35480000-35480400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
12	chr6:35480000-35480400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:35480000-35480400	Enhancers	Right Ventricle	heart
14	chr6:35480000-35480600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr6:35480000-35480800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:35480200-35480400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:35480200-35480400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr6:35480200-35480400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:35480200-35480400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:35480200-35480400	Bivalent Enhancer	Fetal Stomach	stomach
21	chr6:35480200-35480800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:35480200-35481000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:35480200-35481000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:35480200-35487400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:35480200-35490800	Weak transcription	Right Atrium	heart

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