Variant report

Variant	rs566445155
Chromosome Location	chr9:107950323-107950324
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr9:107950086-107950486	HepG2	liver:	n/a	n/a
2	FOS	chr9:107950054-107950435	MCF10A-Er-Src	breast:	n/a	chr9:107950250-107950261 chr9:107950237-107950248
3	EP300	chr9:107949874-107950620	A549	lung:	n/a	n/a
4	FOSL2	chr9:107949823-107950585	A549	lung:	n/a	n/a
5	TCF12	chr9:107950003-107950551	SK-N-SH	brain:	n/a	n/a
6	GABPA	chr9:107950044-107950387	MCF-7	breast:	n/a	n/a
7	FOXA1	chr9:107950015-107950433	HepG2	liver:	n/a	n/a
8	JUND	chr9:107949911-107950504	SK-N-SH	brain:	n/a	chr9:107950250-107950261
9	FOXA2	chr9:107950086-107950857	A549	lung:	n/a	n/a
10	FOS	chr9:107950047-107950466	HUVEC	blood vessel:	n/a	chr9:107950250-107950261 chr9:107950237-107950248
11	ARID3A	chr9:107950180-107950379	HepG2	liver:	n/a	n/a
12	MAX	chr9:107949881-107950541	A549	lung:	n/a	n/a
13	USF1	chr9:107950036-107950425	A549	lung:	n/a	n/a
14	MYC	chr9:107950108-107950392	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr9:107950054-107950449	SK-N-SH	brain:	n/a	n/a
16	MAX	chr9:107949987-107950530	A549	lung:	n/a	n/a
17	REST	chr9:107949893-107950518	A549	lung:	n/a	n/a
18	JUND	chr9:107950234-107950337	K562	blood:	n/a	chr9:107950250-107950261
19	JUN	chr9:107950076-107950418	Hela-S3	cervix:	n/a	n/a
20	RAD21	chr9:107949974-107950472	A549	lung:	n/a	n/a
21	POLR2A	chr9:107950293-107950470	MCF10A-Er-Src	breast:	n/a	n/a
22	FOS	chr9:107950044-107950445	MCF10A-Er-Src	breast:	n/a	chr9:107950250-107950261 chr9:107950237-107950248
23	NFIC	chr9:107950004-107950530	SK-N-SH	brain:	n/a	n/a
24	FOXA1	chr9:107950003-107950440	HepG2	liver:	n/a	n/a
25	TCF12	chr9:107950050-107950476	A549	lung:	n/a	n/a
26	GABPA	chr9:107950055-107950379	A549	lung:	n/a	n/a
27	STAT3	chr9:107950121-107950323	MCF10A-Er-Src	breast:	n/a	n/a
28	FOSL2	chr9:107949982-107950473	SK-N-SH	brain:	n/a	n/a
29	JUND	chr9:107949945-107950476	SK-N-SH	brain:	n/a	chr9:107950250-107950261
30	FOSL1	chr9:107949964-107950393	HCT-116	colon:	n/a	n/a
31	RAD21	chr9:107950101-107950469	A549	lung:	n/a	n/a
32	FOXA2	chr9:107950072-107950324	HepG2	liver:	n/a	n/a
33	CEBPB	chr9:107950001-107950526	A549	lung:	n/a	n/a
34	PBX3	chr9:107949983-107950476	SK-N-SH	brain:	n/a	n/a
35	CEBPB	chr9:107949972-107950541	MCF-7	breast:	n/a	n/a
36	STAT3	chr9:107950142-107950399	MCF10A-Er-Src	breast:	n/a	n/a
37	MYC	chr9:107950078-107950342	MCF10A-Er-Src	breast:	n/a	n/a
38	BCL3	chr9:107949887-107950563	A549	lung:	n/a	n/a
39	GATA3	chr9:107950084-107950485	MCF-7	breast:	n/a	n/a
40	TEAD4	chr9:107949921-107950511	A549	lung:	n/a	n/a
41	TEAD4	chr9:107949956-107950400	SK-N-SH	brain:	n/a	n/a
42	JUND	chr9:107950074-107950446	Hela-S3	cervix:	n/a	chr9:107950250-107950261
43	NR3C1	chr9:107950058-107950453	A549	lung:	n/a	n/a
44	SP1	chr9:107949855-107950558	A549	lung:	n/a	n/a
45	CEBPB	chr9:107950067-107950506	MCF-7	breast:	n/a	n/a
46	JUND	chr9:107950082-107950347	HepG2	liver:	n/a	chr9:107950250-107950261
47	GABPA	chr9:107949991-107950437	A549	lung:	n/a	n/a
48	CEBPB	chr9:107950071-107950470	Hela-S3	cervix:	n/a	n/a
49	EP300	chr9:107950055-107950333	SK-N-SH_RA	brain:	n/a	n/a
50	NR3C1	chr9:107950037-107950427	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107949926..107956747-chr9:108004908..108009966,10	MCF-7	breast:
2	chr9:107948857..107951560-chr9:108005097..108008240,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238208	TF binding region
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1045079	chr9:107938039-107975595	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1043466	chr9:107950174-108001988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107949000-107951200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:107949400-107950800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:107949600-107951400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:107949600-107958200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:107949800-107950400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:107949800-107950400	Enhancers	NH-A	brain
7	chr9:107949800-107950600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:107949800-107950600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:107949800-107950800	Enhancers	NHDF-Ad	bronchial
10	chr9:107949800-107950800	Enhancers	Osteobl	bone
11	chr9:107949800-107951000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:107949800-107951200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:107949800-107951200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:107949800-107952400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr9:107950000-107950400	Enhancers	HepG2	liver
16	chr9:107950000-107950400	Enhancers	HUVEC	blood vessel
17	chr9:107950000-107950600	Enhancers	HSMM	muscle
18	chr9:107950000-107951200	Enhancers	Hela-S3	cervix
19	chr9:107950200-107950800	Enhancers	Liver	Liver
20	chr9:107950200-107951400	Enhancers	Stomach Mucosa	stomach
21	chr9:107950200-107951600	Enhancers	A549	lung

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